| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_0593 |
|---|
| Symbol | |
|---|
| ID | 5171749 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermotoga petrophila RKU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009486 |
|---|
| Strand | - |
|---|
| Start bp | 590363 |
|---|
| End bp | 591205 |
|---|
| Gene Length | 843 bp |
|---|
| Protein Length | 280 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640563101 |
|---|
| Product | RpiR family transcriptional regulator |
|---|
| Protein accession | YP_001244190 |
|---|
| Protein GI | 148269730 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1737] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0000000590128 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGATGTTA TTCAGAGGAT CAAGGAAAAA TACGATGAGT TCACGAATGC AGAGAAAAAA
ATAGCTGATA CCATCCTTTC TGATCCGAAG GGAATTATAG AGAGTTCCAT CAGCGATCTC
AGCGAAAAAG CAGGTGTGAA GAGTGAAGCT TCCGTCGTGA AGTTTTACAA AAAACTGGGA
TTGAACAGCT TTCAACAGTT CAAGGTGCTT TTGGCTCAGA GCATCTCCAG GGCACCGCTC
GAGATCGTCT ACGAAGATGT CTCGAGTGAG GACGATACGA AAACCATCAC GGAGAAGATA
TTCAAAGCAA CAGTGAGGGC CATCCTGGAT ACACTGAATT GGATGGATGT CGATTCCATC
GAAAAGGCCG TCGATCTGTT TAAAAACGCT CAGAGGATCA TATTCATCGG TTTCGCGGCC
TCGGCAGCTG TTGCGTTTGA TGCGTTTCAC AAATTCACAA GAATAGGAAA GAACTGTCTG
TTTTCTAACG ATGAGCACAT CATAGCAACC ATTCTTGCTA CAGCTTCACC AAACGATCTG
CTGGTTGCCA TTTCGCACAC CGGAGAAACG ATCTCTGTGG TGAACTTCGC TAAAAAAGCG
AAAGAGATGA AAATGCCGGT TGTTGCTATC ACAGGGAATA GAAAATCCAC GCTTGCGAAG
TACTCGAATG TTGTCCTTGC CACCAACACA AAAGAGACGA AAATAAGAAC CGATGCGATG
ACTTCGAGAA TAGTCCAGCT TGTGATTCTC GATACGATAT ACACGCTTTT AGCAGCAAGA
GATCCAAGGG CAATAGAAAT TCTCAACAGG AGTAGACTCG CGGTTTCAGA ATTGAAGTAC
TGA
|
|---|
| Protein sequence | MDVIQRIKEK YDEFTNAEKK IADTILSDPK GIIESSISDL SEKAGVKSEA SVVKFYKKLG
LNSFQQFKVL LAQSISRAPL EIVYEDVSSE DDTKTITEKI FKATVRAILD TLNWMDVDSI
EKAVDLFKNA QRIIFIGFAA SAAVAFDAFH KFTRIGKNCL FSNDEHIIAT ILATASPNDL
LVAISHTGET ISVVNFAKKA KEMKMPVVAI TGNRKSTLAK YSNVVLATNT KETKIRTDAM
TSRIVQLVIL DTIYTLLAAR DPRAIEILNR SRLAVSELKY
|
|---|
| |