| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_0592 |
|---|
| Symbol | |
|---|
| ID | 5171785 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermotoga petrophila RKU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009486 |
|---|
| Strand | - |
|---|
| Start bp | 589362 |
|---|
| End bp | 590345 |
|---|
| Gene Length | 984 bp |
|---|
| Protein Length | 327 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640563100 |
|---|
| Product | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding |
|---|
| Protein accession | YP_001244189 |
|---|
| Protein GI | 148269729 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0111] Phosphoglycerate dehydrogenase and related dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000000114513 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAG TATTGATCGT GACACGAACC TTCGGAAAGT ACTCCCAGGA ACCTGTTGAA
TTCCTCAAAA AAGAAGGCTT CGAAATAATA AGATCCGACA CTATAGATCC TGACATCCTG
AAGGAAGTAG ATGCTTTGAT TGTGGGAACA CACCCAGTAA CAGCAGAAAT GATAGAAAAT
TCCAGTCTTA AAGTCATAGC AAAGCACGGT GTGGGGGTGG ACAACATAGA TTTGGAAGCT
GCCACGAAAA AAGGTATTCC CGTTACCATC ACAGCCGGTG CAAATTCCCT TTCCGTCGCA
GAGCTCACAA TCGCTTTCAT CTTCGCACTG ATTAGAGGTC TTGTATGGGC TCACAACAAA
CTGTTTCTCG AAAGAAAATG GGAAGGAACG GTGGGACAGG AAGTTTCTGG AAAAACACTG
GGTGTGGTGG GGTTTGGCTC GATAGGAAGA GAAGTGGTTA AAAAGGCTGT CTGCCTTGGA
ATGAACGTGC TGGTCTACGA TCCTTATGTG AGTAAAGATA ATGTTAGATT ACTGGAGGCT
ACCCCTGTTG ATGATCTGGA TCAACTTCTA AAAGAGAGTG ATTTCGTCTC ACTCCATGTT
CCGCTGAACG AAAGTACAAA GAACATGATA GGAGAAAGAG AACTCTCACT CATGAAGAAA
TCTGCTTTTT TGATCAACAC CTCCCGCGGA GGACTGGTAG ATGAAGAAGC ACTCGTGAAA
GCTTTGAAAG AGGGAAGAAT AGCAGGTGCT GCCTTGGATG TCTTCTCTGA GGAACCTCCG
AATCCCAATT CACCTCTTTT CAAATGTCCC AATCTCATCA CCACAGCCCA TATAGGTGCG
CATACAAAGG AATCCATCCT CAGAATGAAT ATGATGGCTG CTCAATCTGT GGTGGACTTT
TTCAAGGGTA ATATTCCGAA ATACGTGGTG AATAAAGAAG TAGCCCAGAT TTTGAAAGAG
AAGGGTTATC AAGAAGTATC TTGA
|
|---|
| Protein sequence | MKKVLIVTRT FGKYSQEPVE FLKKEGFEII RSDTIDPDIL KEVDALIVGT HPVTAEMIEN
SSLKVIAKHG VGVDNIDLEA ATKKGIPVTI TAGANSLSVA ELTIAFIFAL IRGLVWAHNK
LFLERKWEGT VGQEVSGKTL GVVGFGSIGR EVVKKAVCLG MNVLVYDPYV SKDNVRLLEA
TPVDDLDQLL KESDFVSLHV PLNESTKNMI GERELSLMKK SAFLINTSRG GLVDEEALVK
ALKEGRIAGA ALDVFSEEPP NPNSPLFKCP NLITTAHIGA HTKESILRMN MMAAQSVVDF
FKGNIPKYVV NKEVAQILKE KGYQEVS
|
|---|
| |