Gene Tpet_0587 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTpet_0587 
Symbol 
ID5171324 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermotoga petrophila RKU-1 
KingdomBacteria 
Replicon accessionNC_009486 
Strand+ 
Start bp585180 
End bp585785 
Gene Length606 bp 
Protein Length201 aa 
Translation table11 
GC content47% 
IMG OID640563094 
Productorotidine 5'-phosphate decarboxylase 
Protein accessionYP_001244184 
Protein GI148269724 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG0284] Orotidine-5'-phosphate decarboxylase 
TIGRFAM ID[TIGR01740] orotidine 5'-phosphate decarboxylase, subfamily 1 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.0957487 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACACCTG TTCTCAGTCT GGACATGGAA GATCCTATCA GATTCATCGA CGAAAACGGC 
AGTTTCGAAG TGGTGAAGGT GGGGCACAAC CTCGCCGTAC ACGGAAAAAA GATCTTCGAC 
GAACTCGCAA AGAGGAATTT GAAGATAATC CTTGACCTGA AGTTCTGTGA TATCCCTTCA 
ACGGTGGAAC GTTCCATAAA GAGCTGGGAT CATCCGGCGA TCATAGGTTT CACAGTTCAC 
TCCTGCGCTG GATACGAAAG CGTGGAGAGA GCCCTCAGGA CAACAGACAA ACATGTGTTC 
GTTGTGGTGA AACTCACTTC CATGGAAGGA TCTCTCGAGG ATTACATGGA CAGGATAGAA 
AAACTGAACA AGCTTGGGTG TGATTTCGTG CTTCCTGGTC CATGGGCAAA GGCTCTGAGA 
GAGAAGATAA AAGGCAAAAT TCTCGTTCCC GGCATCAGAA TGGAAGTGAA AGCAGACGAT 
CAAAAGGACG TCGTAACGCT CGAAGAAATG AAGGGAATAG CGGATTTTGC TGTGCTCGGA 
AGAGAGATCT ACCTGAGCGA AAATCCCGGA GAAAAGATCA AAAGAATAAA GGAGATGAGA 
CTGTGA
 
Protein sequence
MTPVLSLDME DPIRFIDENG SFEVVKVGHN LAVHGKKIFD ELAKRNLKII LDLKFCDIPS 
TVERSIKSWD HPAIIGFTVH SCAGYESVER ALRTTDKHVF VVVKLTSMEG SLEDYMDRIE 
KLNKLGCDFV LPGPWAKALR EKIKGKILVP GIRMEVKADD QKDVVTLEEM KGIADFAVLG 
REIYLSENPG EKIKRIKEMR L