| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_0575 |
|---|
| Symbol | |
|---|
| ID | 5171223 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermotoga petrophila RKU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009486 |
|---|
| Strand | - |
|---|
| Start bp | 573694 |
|---|
| End bp | 574959 |
|---|
| Gene Length | 1266 bp |
|---|
| Protein Length | 421 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640563082 |
|---|
| Product | 3-phosphoshikimate 1-carboxyvinyltransferase |
|---|
| Protein accession | YP_001244172 |
|---|
| Protein GI | 148269712 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0128] 5-enolpyruvylshikimate-3-phosphate synthase |
|---|
| TIGRFAM ID | [TIGR01356] 3-phosphoshikimate 1-carboxyvinyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.000965134 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAAGGTAC TTCCGGCGAA GAAGGTTGAA GGAGTGCTGA GCGTTCCTCC GGACAAATCC
ATAACTCACA GGGCTCTCAT TCTGTCCGCT TTGGCGGAAA CGGAAAGCAC CCTGTACAAC
CTCTTGAGGT GTCTCGACAC AGAGAGAACC CACGATATTC TCGAAAAACT CGGTACACGT
TTTGAAGGCG ATTGGGAAAA GATGAAGGTC TTTCCGAAGC CCTTCGCTGA GCCAATAGAA
CCTCTCTTCT GTGGAAACTC CGGAACAACC ACGAGGTTGA TGAGTGGAGT TCTTGCTTCA
TACGAGATGT TCACAGTGCT TTACGGGGAT TCTTCTCTTT CCAGAAGGCC GATGAGAAGA
GTGATCGAAC CTCTGGAGAT GATGGGAGCG CGTTTCATGG CGAGGCAGAA CAACTACCTT
CCCATGGCTA TCAAGGGAAA TCACCTTTCC GGTATCAGCT ATAAAACACC GGTGGCGAGC
GCTCAAGTGA AGAGCGCGGT TCTTCTGGCG GGGCTCAGAG CCAGCGGACG AACAATCGTT
ATCGAACCAG CAAAAAGCAG AGATCACACG GAAAGGATGC TCAAAAACCT CGGTGTTCCC
GTCGAGGTGG AGGGAACACG TGTGGTTCTG GAGCCTGCTA CCTTCAGGGG TTTCACGATG
AAAGTCCCTG GTGATATCTC GTCGGCTGCT TTCTTCGTGG TTCTCGGCGC CATTCATCCC
AACGCTCGAA TCACAGTAAC GGACGTTGGC CTGAATCCCA CCCGAACGGG ACTCCTCGAA
GTTATGAAAC TCATGGGAGC CAACCTGGAG TGGGAGATCA CGGAAGAAAA TCTTGAACCG
ATAGGAACTG TGAGGGTTGA GACATCTCCA AACCTGAAAG GTGTGGTTGT TCCCGAACAC
CTCGTACCTC TCATGATAGA TGAACTGCCT CTTGTGGCAC TTCTCGGTGT TTTTGCGGAA
GGAGAAACGG TTGTGAGAAA CGCGGAGGAG TTGAGAAAGA AGGAATCCGA CAGGATAAGG
GTTCTGGTGG AAAACTTCAA ACGGCTCGGT GTCGAAATAG AAGAGTTCAA AGATGGTTTC
AAGATCGTTG GAAAGCAGAG CATAAAAGGT GGATCGGTGG ATCCAGAAGG CGACCACAGA
ATGGCTATGC TCTTTTCCAT AGCAGGGCTC GTGAGTGAAG AGGGGGTTGA TGTGAAAGAT
CACGAATGCG TGGCGGTGTC TTTCCCGAAC TTTTACGAAC TGCTGGAGAG AGTGGTGATA
TCATGA
|
|---|
| Protein sequence | MKVLPAKKVE GVLSVPPDKS ITHRALILSA LAETESTLYN LLRCLDTERT HDILEKLGTR
FEGDWEKMKV FPKPFAEPIE PLFCGNSGTT TRLMSGVLAS YEMFTVLYGD SSLSRRPMRR
VIEPLEMMGA RFMARQNNYL PMAIKGNHLS GISYKTPVAS AQVKSAVLLA GLRASGRTIV
IEPAKSRDHT ERMLKNLGVP VEVEGTRVVL EPATFRGFTM KVPGDISSAA FFVVLGAIHP
NARITVTDVG LNPTRTGLLE VMKLMGANLE WEITEENLEP IGTVRVETSP NLKGVVVPEH
LVPLMIDELP LVALLGVFAE GETVVRNAEE LRKKESDRIR VLVENFKRLG VEIEEFKDGF
KIVGKQSIKG GSVDPEGDHR MAMLFSIAGL VSEEGVDVKD HECVAVSFPN FYELLERVVI
S
|
|---|
| |