Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tpet_0574 |
Symbol | |
ID | 5170740 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermotoga petrophila RKU-1 |
Kingdom | Bacteria |
Replicon accession | NC_009486 |
Strand | - |
Start bp | 572936 |
End bp | 573697 |
Gene Length | 762 bp |
Protein Length | 253 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640563081 |
Product | shikimate dehydrogenase substrate binding subunit |
Protein accession | YP_001244171 |
Protein GI | 148269711 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0169] Shikimate 5-dehydrogenase |
TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.000000629115 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAATTCT GCATCATAGG GTATCCGGTG AGTCACAGCA TATCACCAAG GCTTTACAAC GAGTATTTCA AAAGGGCGGG AATGAACCAC TCGTACGGTA TGGAAGAGAT ACCACCTGAA TCTTTCGACA CGGAGATAAG AAGGATTCTC GAAGAATACG ATGGTTTCAA CGCGACAATT CCTCACAAAG AAAGAGTGAT GCGGTACGTC GAACCATCTG AAGATGCGCA GAGAATAAAA GCCGTGAACT GCGTCTTTCG GGGAAAGGGA TACAACACCG ACTGGGTTGG CGTTGTGAAA TCGCTCGAGG GTGTAGAGGT GAAAGAACCC GTTGTCGTTG TGGGAGCGGG CGGAGCCGCA CGTGCTGTGA TCTACGCTCT CCTCCAGATG GGCGTGAAAG ACATCTGGGT GGTGAACAGA ACGATCGAAA GGGCGAAGGC TCTCGATTTT CCTGTGAAAA TTTTCTCTCT CGATCAGCTC GACGAGGTTG TGAAAAAGGC GAAGAGTCTC TTCAACACCA CTTCCGTTGG AATGAAGGGA GAGAAACTGA CCGTTTCCGA AGCTTCTTTG AAAGGTCTGT ATCTTGTTTA CGACGTGGTG TACTTTGAGA CTCCTCTCGT TTCTGATGCG AAGAGATTGG GAGTGGAACA CGTTGTAAAG GGAAACCTCA TGTTTTACTA TCAGGCGATG GAGAATCTCA AAATATGGGG AATCTACGAT GAAAGATCGT TCAAAGAAGT GTTCGAGGAG GTACTGAGAT GA
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Protein sequence | MKFCIIGYPV SHSISPRLYN EYFKRAGMNH SYGMEEIPPE SFDTEIRRIL EEYDGFNATI PHKERVMRYV EPSEDAQRIK AVNCVFRGKG YNTDWVGVVK SLEGVEVKEP VVVVGAGGAA RAVIYALLQM GVKDIWVVNR TIERAKALDF PVKIFSLDQL DEVVKKAKSL FNTTSVGMKG EKLTVSEASL KGLYLVYDVV YFETPLVSDA KRLGVEHVVK GNLMFYYQAM ENLKIWGIYD ERSFKEVFEE VLR
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