Gene Tpet_0568 details

Gene Information

• Locus tag: Tpet_0568
• ID: 5171268
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thermotoga petrophila RKU-1
• Kingdom: Bacteria
• Replicon accession: NC_009486
• Strand: +
• Start bp: 566265
• End bp: 566969
• Gene Length: 705 bp
• Protein Length: 234 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 640563075
• Product: ABC transporter related
• Protein accession: YP_001244165
• Protein GI: 148269705
• COG category: [V] Defense mechanisms
• COG ID: [COG1136] ABC-type antimicrobial peptide transport system, ATPase component

Plasmid Coverage information

• Num covering plasmid clones: 24
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAAAGG TGATGGAGCT TGTCGATGTG TGGAAAATAT ATGACCTGGG TGAGGTGAAG 
GTCGAGGCTC TTCGTGGTGT TTCTTTCGAG GTGTTCGAAG GAGAATACGT GATCATAATA 
GGACCATCTG GAAGCGGAAA GTCTACACTC CTTCACATTC TTGGATGTCT CGATCGTCCT 
ACAAAGGGAA AGGTACTCAT AGAAGGAGAA GAGGTTTCGA GGATGGGTGA TCGAAGGCTC 
GCGCAGGTTA GAAACAGGAA AATAGGCTTT GTCTTTCAGA GTTACAACCT TCTTCCCCGT 
CTCACCGCTT TGGAAAATGT GGAGCTTCCA ATGATCTACG CGGGTGTACC GGCGAAGGAG 
AGAAAAAGGA GGGCAAAAGA GCTTCTGGAA TTGGTCGGTC TGGGAGACAG ACTCCATCAC 
CGGCCGAATC AGCTTTCAGG AGGTCAGCAA CAAAGAGTTG CGATAGCGAG GGCTCTGGCA 
AACGATCCTG TCTTCATCCT CGCAGACGAA CCAACGGGAA ATCTGGACAC AAAAACTGGC 
GAAGAGATAC TGGAGCTGTT CAGAAAACTC CACGAGATGG GAAAAACGCT GGTTGTTGTG 
ACTCACAACC TCGAGATGGT GGACGAAGGA ACGTGCATCG TGAGAATCAG AGATGGAAAA 
ATCGAAGGTG TAGAACGTCG AGGTGTTGTG TATGGAGATA CTTAA 

 

Protein sequence

MKKVMELVDV WKIYDLGEVK VEALRGVSFE VFEGEYVIII GPSGSGKSTL LHILGCLDRP 
TKGKVLIEGE EVSRMGDRRL AQVRNRKIGF VFQSYNLLPR LTALENVELP MIYAGVPAKE 
RKRRAKELLE LVGLGDRLHH RPNQLSGGQQ QRVAIARALA NDPVFILADE PTGNLDTKTG 
EEILELFRKL HEMGKTLVVV THNLEMVDEG TCIVRIRDGK IEGVERRGVV YGDT