| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_0488 |
|---|
| Symbol | |
|---|
| ID | 5171275 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermotoga petrophila RKU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009486 |
|---|
| Strand | + |
|---|
| Start bp | 482488 |
|---|
| End bp | 483495 |
|---|
| Gene Length | 1008 bp |
|---|
| Protein Length | 335 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640562997 |
|---|
| Product | oligopeptide/dipeptide ABC transporter, ATPase subunit |
|---|
| Protein accession | YP_001244088 |
|---|
| Protein GI | 148269628 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component |
|---|
| TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 45 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGATAGCGG TGGAAGTGTT GAGAACAGAA AATCTCAAGT CTTATTACAT TCTGGACATA
TTCGGAAAAA AGAGAGTAGT GAAAGCAGTG GACGAGGTGA ACATTTCGAT CATGGAGAAC
GAGATATACG GTATCGCAGG AGAGAGCGGA TGTGGAAAGA GCACTCTTTT GAGAGCTCTC
TTTGCTGCAA TAGAACCACC ACAGAGAATA GTGGGAGGAA AGGTCTTGTA CAGAGAAAAC
GGAAAAGAAG TGGATGTTTA TTCTCTGAGC GATGAAGAGA GAAGAAAACT CAGATGGAAT
TTCATTTCCT ACGTTCCTCA AGGATCTATG AGTGTTCTCA ATCCCGTGGT GAAGATAAAA
GAGACCTTCA AGGATTTCAT AGAAAGCCAC ACGACTGGAA AGACGAAAGA AGAAGCGTAC
GAGATGGCAA AAGAACACAT AAGAGAGCTG GGGCTTCCAA TAGAAATTCT CAACGCCTAT
CCACACCAGC TATCTGGTGG AATGAGGCAG AGGGTAACGA TCGCCCTTGC AACCGTTCTG
TCACCGAAGG TGATCATAGC GGACGAGCCG ACGACGGCTC TCGACGTTGT GACTCAGAGA
GGTGTGATCC AGCTTCTCAA GGAGATACAA TCTTCAAGAC AGAACACCAT CATCCTTGTC
ACACACGATA TGGGGGTTCA TGCGAACGTG ACAGACAGGA TAGCAATCAT GTACGCAGGA
AAGATCATAG AAGAAGGGAA AACAGAAGAG ATCTTTGAAA ACCCCTTGCA TCCCTACACG
AAGTATCTGA TCTACTCGCT TCCAAAGTTT GGAGACAAAG GAAGGAGAGA AAGCGCTCCT
GGAAGTCCTC CGTCACTCGC CGATCTTCCA CCAGGATGCA GTTTCCATCC AAGATGTCCA
CATGCGTTCG ATAGGTGCAA AAAAGAAGTA CCCCCTCTCA AGGAATACCT GCCGGGCCAC
AGAGTTGCAT GCTGGTTAGT AGAGGAGGGA AAGAATGCCG CTTCTTGA
|
|---|
| Protein sequence | MIAVEVLRTE NLKSYYILDI FGKKRVVKAV DEVNISIMEN EIYGIAGESG CGKSTLLRAL
FAAIEPPQRI VGGKVLYREN GKEVDVYSLS DEERRKLRWN FISYVPQGSM SVLNPVVKIK
ETFKDFIESH TTGKTKEEAY EMAKEHIREL GLPIEILNAY PHQLSGGMRQ RVTIALATVL
SPKVIIADEP TTALDVVTQR GVIQLLKEIQ SSRQNTIILV THDMGVHANV TDRIAIMYAG
KIIEEGKTEE IFENPLHPYT KYLIYSLPKF GDKGRRESAP GSPPSLADLP PGCSFHPRCP
HAFDRCKKEV PPLKEYLPGH RVACWLVEEG KNAAS
|
|---|
| |