| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_0484 |
|---|
| Symbol | |
|---|
| ID | 5170327 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermotoga petrophila RKU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009486 |
|---|
| Strand | - |
|---|
| Start bp | 477388 |
|---|
| End bp | 478491 |
|---|
| Gene Length | 1104 bp |
|---|
| Protein Length | 367 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640562993 |
|---|
| Product | alcohol dehydrogenase |
|---|
| Protein accession | YP_001244084 |
|---|
| Protein GI | 148269624 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG1063] Threonine dehydrogenase and related Zn-dependent dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 40 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGGTTGA AAGCTCACGC CATGGTGCTG GAAAAGTTCA ATCAACCTCT TGTATGTAAA
GAATTCGAGA TCTCAGACAT TCCACGAGGA TCTATTCTGG TTGAAATTCT CTCTGCAGGT
GTTTGTGGTT CCGATGTTCA CATGTTTCGC GGAGAAGATC CCAGAGTACC CCTTCCCATC
ATCCTGGGAC ACGAGGGTGC AGGAAGAGTT GTCGAAGTGA ACGGAGAAAA GAGGGATCTC
AACGGAGAAC TTCTTAAACC CGGTGATTTG ATCGTCTGGA ACAGAGGTAT CACCTGTGGT
GAATGCTATT GGTGTAAGGT GTCAAAAGAA CCTTATCTCT GTCCGAACAG AATGGTCTAT
GGAATAAACA GGGGATGTTC TGAGTATCCT CACCTCAGAG GATGCTACAG TTCTCACATT
GTGCTGGACC CAGAAACAGA TGTTTTGAAA GTATCGGAAA AAGACGATCT TGATGTTCTT
GCCATGGCGA TGTGTTCAGG AGCAACTGCA TATCACGCAT TTGATGAGTA TCCTGAATCC
TTTGCTGGGA AGACCGTTGT TATACAGGGA GCGGGACCTT TGGGATTGTT TGGAGTTGTT
ATAGCAAGGA GTCTTGGTGC GGAGAAGGTG GTTGTAATAG CGGGTTCTCC GAACAGGCTG
AAACTCGCCG AAGAAATAGG AGCAGATCTC ACATTTAACA GAAGAGAAAC GAGTGCTGAG
GAGAGAAGAA AAGCAATAAT GGACATCACA CACGGTAGAG GAGCAGATTT TGTCCTGGAG
GCGACGGGGG ACAGCAGAGC GCTTCTCGAA GGAGCTGAGT TACTGAGAAG AGGAGGATTT
TACGCTGTTG CGGGGGTAGC TGTGCCACAG GATCCTGTAC CTTTTAAGGT TTACGAATGG
CTTGTTTTGA AGAGCGCGAC TTTCAAGGGA ATTTGGGTCA GTGATACTTC ACACTTTGTG
AAGACGGTTT CAATCACGTC CAGGAATTAT CAACTTCTTT CCAAACTCAT CACGCACAGA
CTTCCTTTGA AAGAGGCAAA CAGAGCACTG GAACTCATGG AATCGAGAGA GGCTTTGAAG
GTAATCCTTT ATCCGGAGGG ATGA
|
|---|
| Protein sequence | MGLKAHAMVL EKFNQPLVCK EFEISDIPRG SILVEILSAG VCGSDVHMFR GEDPRVPLPI
ILGHEGAGRV VEVNGEKRDL NGELLKPGDL IVWNRGITCG ECYWCKVSKE PYLCPNRMVY
GINRGCSEYP HLRGCYSSHI VLDPETDVLK VSEKDDLDVL AMAMCSGATA YHAFDEYPES
FAGKTVVIQG AGPLGLFGVV IARSLGAEKV VVIAGSPNRL KLAEEIGADL TFNRRETSAE
ERRKAIMDIT HGRGADFVLE ATGDSRALLE GAELLRRGGF YAVAGVAVPQ DPVPFKVYEW
LVLKSATFKG IWVSDTSHFV KTVSITSRNY QLLSKLITHR LPLKEANRAL ELMESREALK
VILYPEG
|
|---|
| |