Gene Tpet_0420 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTpet_0420 
Symbol 
ID5170256 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermotoga petrophila RKU-1 
KingdomBacteria 
Replicon accessionNC_009486 
Strand
Start bp406958 
End bp408112 
Gene Length1155 bp 
Protein Length384 aa 
Translation table11 
GC content48% 
IMG OID640562920 
Productoligopeptide/dipeptide ABC transporter, ATPase subunit 
Protein accessionYP_001244020 
Protein GI148269560 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component 
TIGRFAM ID[TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.230776 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAGCAGGG AAATCCTTAG AGTTGAAAAT CTGGTGAAAC ATTTTCCCAT AAGGGCTGGT 
GTTTTTAAGA GAATTGTTGG ATGGGTGAAG GCCGTCGATG GTGTCAGCTT CAGCATAAAC
GAGGGAGAAA CCTTCGGCCT CGTTGGAGAG TCGGGTTGTG GAAAAACCAC GATTGGAATG
ACCCTGCTCA GACTGTACGA GCCAACATCG GGACGCATCA TCGTGGACAA CGAAAACACG
ACCTACTACT TCATGCCGCG TTCCAAGGCA AAAAAATACA TAAAGCGCAC CTATCTGAGC
AGGTTCGTCA ACATGAAGGA GTCAGATGTG GAAAAACTGG AAGGTGTCGA CAGAGAGTAC
GCCCGTATTT TCTTTGAGGA GGCAAAGGGT TCTCCAAAGA AGTTCATGTC CATTCTTCTC
GATGATCTAC CGGAGAAAAG GAAAAAATTT CGAAGAGAGA TGCAGATAGT GTTCCAGGAT
CCATACAGTT CCCTGAACCC GAGGTTGAGA GTGAAGAGCA TAGTGGGTGA AGGCATCGTC
ACACACAGGA TCGCAAGGGG GGAAGAAGTA GAGAAACGAA TCAAAGAAAT CTTGGAGGAT
GTGGGTATTC CTTCGGCTTA CGTGTACAGG TTTCCACATG AATTCTCCGG TGGTCAGCGC
CAGAGAATCG GAATCGCACG TGCCCTGGCT TTGGAACCCA AACTCGTCGT GGCGGACGAG
GCCGTCGCTG CTCTGGACGT CTCGATAAGA AGTCAGATCA TAAACCTCAT GGAAGATCTT
CAGAGGGAAC ACAAACTCAC GTACATTTTC ATTTCGCACG ATCTGGCTGT TGTAAAGCAC
ATAAGCGATA GAATAGGTGT GATGTATCTT GGAAAGATGG TGGAACTTGC TCCTAAAAAA
GACTTGTTCG AAAAACCGCT CCACCCTTAC ACTGTAGCTC TCATGTCTGC GATACCGGTA
CCTGATCCAA CAAAGAAGAG GGAAAGAATC ATTCTCAAAG GAGATGTTCC GAGCCCTATA
AATCCGCCGT CTGGCTGTAG ATTCCACACA AGATGTCCCA TAGCGAAAGA GATTTGCTCC
AAGGAAGAAC CGGCTTTTCG AGAGGTTGAA GAGGGACACT TCGTCGCCTG TCACTTCCCG
GGTGAGCTGA GGTGA
 
Protein sequence
MSREILRVEN LVKHFPIRAG VFKRIVGWVK AVDGVSFSIN EGETFGLVGE SGCGKTTIGM 
TLLRLYEPTS GRIIVDNENT TYYFMPRSKA KKYIKRTYLS RFVNMKESDV EKLEGVDREY
ARIFFEEAKG SPKKFMSILL DDLPEKRKKF RREMQIVFQD PYSSLNPRLR VKSIVGEGIV
THRIARGEEV EKRIKEILED VGIPSAYVYR FPHEFSGGQR QRIGIARALA LEPKLVVADE
AVAALDVSIR SQIINLMEDL QREHKLTYIF ISHDLAVVKH ISDRIGVMYL GKMVELAPKK
DLFEKPLHPY TVALMSAIPV PDPTKKRERI ILKGDVPSPI NPPSGCRFHT RCPIAKEICS
KEEPAFREVE EGHFVACHFP GELR