Gene Tpet_0358 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTpet_0358 
Symbol 
ID5170559 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermotoga petrophila RKU-1 
KingdomBacteria 
Replicon accessionNC_009486 
Strand
Start bp340725 
End bp342638 
Gene Length1914 bp 
Protein Length637 aa 
Translation table11 
GC content46% 
IMG OID640562862 
Productmethyltransferase type 11 
Protein accessionYP_001243963 
Protein GI148269503 
COG category[H] Coenzyme transport and metabolism
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes
[COG2226] Methylase involved in ubiquinone/menaquinone biosynthesis 
TIGRFAM ID[TIGR01205] D-alanine--D-alanine ligase
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000000290663 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGAACA ACGGATCTCC AAGGAAGAAC ATTCAGAGGA AGTACAGAAG ATTTTTGGGA 
CCTGTTACGG ATCTGGAAGA ACATGTGGAG CCTGACTGGT GGAGTCGTAT CTTCAATTCG
CTCTATCTAA AAACAGATGC AGATGTGGTG GACGATATAA ACATTACCAG AGAAGAAGTG
GATCTGTTCT CGCGCGTGTT GAATCTCTCT CCAGATGATC ACATCCTTGA CTTGTGTTGT
GGCCACGGCA GACATTCTCT CGAGTTGGCG CGACGCGGTT TCCGAAACGT CGAGGGGCTC
GATCGTTCTC ACTATTTGAT TCAAAAAGCA AAAAATCAGG CAAAGAAAGA GGGGCTGAAC
GTCAAGTTCA GAGAAGGAGA TGCAAGAAAA CTACCGTACT CTCCTGATAC ATTTGATGTG
GTGTTGATCC TTGGTAACAG TTTCGGCTAT TTCGAAACAG TGGAGGAAGA TTTAAAAGTT
CTCAAAGAAG TCTTCAGGGT TTTGAAGCCA TGGGGAAAAA TTCTCATCGA TGTGGCGAAT
GGAGAATATT TGAAAAACAA CTTCCAGCCG AGGTCTTGGG AATGGATCGA CAAGAAACAT
TTCGTCTGCA GAGAGCGATC TCTTTCGGTT GATGGGAAAA GGCTCATTTC ACGTGAGGTG
ATCGTCAACG CCGAAAAGGG AGTTATAGCG GATCAGTTCT ACGCGGAGCG TCTTTACACA
CATGAAGAAC TGGAAGGTCT TCTGAAAGCG GCGGGATTCA GCGATGTGAA ATTCCATGGT
GAGCTTTCTC CCACATCGCA GAGAAACCAG GATCTTGGGA TGATGGAAAG AAGGATCATA
GTAACAGCTG TTGCAAAGAA AGAATGGACC CCTGTCAGAA AAAAACCTGA ACAAACCACA
AAGAACGTGG TGGTCGTTCT GGGAGATCCC AGAAAACCAG ATCATCTGAA ACCGAATTCA
ATTTTCGATG AAGATGATTT TTACACCATT GATCAGATGA AAGCAGCTCT CAGAAGCTTG
AAAGGGTATA ACTTTTCCTA TCTCGATAAT CACGACACAT TGATCACTGA CCTGATGAAG
TTGAAAGGGA AGATTGACTA TGTCTTTAAT CTGTGCGATG AAGGTTTCAA CAACGATCCC
AGGAAAGAAG CCCATGTCCC AGCATTGTTG GAAATGCTGG GAATCCCCTA CACCGGTTCA
GGTCCTCAGA CGCTCGTCCT CTGTTACGAT AAGTCCCTCA TCAGAGGAAT CGCAAGGGAG
ATGGGTATTC CTGTTCCAAG AGCTGTCTTC ATCAAACCAG AAGACACCAC TTTCGAACTA
CCATTTCCTT TTCCTGCCAT CGTGAAACCC AACTTTGGGG ATTCAAGTTT CGGAATAACA
CAAAAAAGTG TTGTGTACAC ACCTGAAGAA CTCATAAATG CTGTTTCAGA GATAAGGAAT
AAGTTCGGTT ACGATAAACC TGTGCTGGTC GAAGAATTCT TGACAGGAAA GGATCTGAGC
GTGGGTATAA TAGGAAATCC ACCGGATTCT TACATGGTAC TGCCGATAAT AGAGGAAGAC
TACTCCGCGC TCCCTCCAGA GCTTCCAAGG ATATGTGGGT ACGAGGCGAA GTGGCTGCCG
GACTCCCCGT ACTGGAACAT AAAGTCCATT CCGGCAGACC TTCCCGAGGA AACGGAGAAG
TTCATCATCG ATTGCTGTTT GAAACTCTTC GAAAGACTTG AGTGTAGAGA TTACTGCAGA
TTCGACTGGA GGCTCGATGC CGAAGGTAAC CCGAAGCTTC TTGAAGTGAA TCCGAATCCC
GGATGGTGCT GGGATGGGCA TCTTGCAAAA ATGGCAAAGA TCGCGGGGAT GTCTTACGCG
GAGATGCTGG GGGCGATTCT CAAAGCGGCT GAAGAGAGGC TGAACATCAG ATGA
 
Protein sequence
MKNNGSPRKN IQRKYRRFLG PVTDLEEHVE PDWWSRIFNS LYLKTDADVV DDINITREEV 
DLFSRVLNLS PDDHILDLCC GHGRHSLELA RRGFRNVEGL DRSHYLIQKA KNQAKKEGLN
VKFREGDARK LPYSPDTFDV VLILGNSFGY FETVEEDLKV LKEVFRVLKP WGKILIDVAN
GEYLKNNFQP RSWEWIDKKH FVCRERSLSV DGKRLISREV IVNAEKGVIA DQFYAERLYT
HEELEGLLKA AGFSDVKFHG ELSPTSQRNQ DLGMMERRII VTAVAKKEWT PVRKKPEQTT
KNVVVVLGDP RKPDHLKPNS IFDEDDFYTI DQMKAALRSL KGYNFSYLDN HDTLITDLMK
LKGKIDYVFN LCDEGFNNDP RKEAHVPALL EMLGIPYTGS GPQTLVLCYD KSLIRGIARE
MGIPVPRAVF IKPEDTTFEL PFPFPAIVKP NFGDSSFGIT QKSVVYTPEE LINAVSEIRN
KFGYDKPVLV EEFLTGKDLS VGIIGNPPDS YMVLPIIEED YSALPPELPR ICGYEAKWLP
DSPYWNIKSI PADLPEETEK FIIDCCLKLF ERLECRDYCR FDWRLDAEGN PKLLEVNPNP
GWCWDGHLAK MAKIAGMSYA EMLGAILKAA EERLNIR