Gene Tpet_0338 details

Gene Information

• Locus tag: Tpet_0338
• ID: 5171578
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thermotoga petrophila RKU-1
• Kingdom: Bacteria
• Replicon accession: NC_009486
• Strand: -
• Start bp: 318836
• End bp: 320668
• Gene Length: 1833 bp
• Protein Length: 610 aa
• Translation table: 11
• GC content: 52%
• IMG OID: 640562841
• Product: ATP-dependent metalloprotease FtsH
• Protein accession: YP_001243943
• Protein GI: 148269483
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0465] ATP-dependent Zn proteases
• TIGRFAM ID: [TIGR01241] ATP-dependent metalloprotease FtsH

Plasmid Coverage information

• Num covering plasmid clones: 34
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGAACAGAT CTAACATCTG GAATCTGCTG TTCACGATTC TCATAATAGT TACACTTTTC 
TGGCTCGCCA GATTTTTTTA CGTCGAAAAC TCACCTGTGT CCAAGCTGAG CTACACGAGT 
TTTGTTCAGA TGGTCGAAGA TGAAAGAAGT GTGGTCTCAG AAGTTGTGAT CAGGGACGAC 
GGAGTACTGA GAGTTTACAC CAAAGACGGC AGAGTTTACG AAGTGGACGC TCCGTGGGCT 
GTGAACGATT CGCAGCTCAT AGAAAAACTG GTTTCGAAGG GAATAAAAGT CTCTGGAGAG 
AGAAGCGGAA GCAGTTCCTT TTGGATAAAC GTCCTCGGCA CTCTCATACC GACGATTCTC 
TTCATTGTCG TGTGGCTCTT CATCATGAGG AGCCTCTCCG GAAGGAACAA TCAGGCGTTC 
ACTTTCACAA AGAGCAGGGC AACGATGTAC AAACCCTCTG GGAACAAGAG GGTCACCTTC 
AAGGACGTTG GAGGCGCTGA TGAGGCTATA GAAGAACTCA GAGAGGTAGT TGAATTTCTG 
AAAGATCCCT CTAAATTCAA CAGGATCGGT GCAAGAATGC CCAAAGGGAT CCTCCTTGTA 
GGGCCTCCGG GTACCGGTAA AACGCTCCTT GCGAGGGCAG TTGCGGGCGA AGCGAACGTA 
CCGTTCTTCC ACATCAGCGG TTCTGACTTT GTGGAGCTCT TTGTCGGAGT CGGTGCCGCG 
AGGGTGAGAG ATCTGTTTGC ACAGGCGAAG GCTCACGCTC CCTGCATCGT CTTCATCGAT 
GAGATCGATG CCGTTGGAAG GCACAGGGGA GCGGGACTTG GAGGAGGACA CGATGAGAGG 
GAACAGACCC TGAACCAGCT CCTCGTGGAG ATGGATGGAT TCGATTCGAA AGAGGGCATC 
ATAGTCATGG CGGCCACAAA CAGGCCCGAT ATCCTGGACC CTGCACTTTT GAGGCCCGGA 
AGATTCGACA AGAAAATCGT GGTCGATCCA CCTGACATGC TCGGAAGAAA GAAGATACTC 
GAGATTCACA CGAGAAACAA ACCGCTCGCG GAAGACGTGA ATCTGGAGAT CATAGCGAAG 
AGAACGCCGG GATTCGTCGG GGCGGACCTG GAAAACCTCG TCAACGAGGC GGCGCTTCTT 
GCGGCGAGGG AAGGTAGAGA CAAAATCACG ATGAAGGACT TCGAGGAAGC CATAGACAGG 
GTGATAGCCG GACCCGCAAG AAAGTCGAAG CTGATCAGCC CGAAGGAAAA GCGCATCATA 
GCGTACCACG AGGCGGGACA CGCCGTGGTA TCCACCGTGG TTCCAAACGG GGAACCCGTT 
CACAGAATCT CCATAATCCC CAGGGGATAC AAAGCACTCG GATACACGCT TCATCTCCCT 
GAAGAGGATA AGTACCTCGT TACGAAGAGT GAACTTCTCG ACAAGCTCAC GGCTCTGCTC 
GGAGGCAGGG CAGCGGAAGA GGTGGTCTTT GGCGATGTGA CGAGCGGAGC AGCAAACGAC 
ATAGAAAGGG CCACGGAAAT TGCGAGAAAC ATGGTCTGTC AGCTGGGAAT GAGTGAAGAA 
CTCGGACCCC TCGCCTGGGG GAAGGAAGAG CAGGAAGTCT TTCTTGGAAA AGAGATCACA 
CGGCTCAGAA ACTACAGTGA AGAGGTAGCG AGCAAAATCG ACGAAGAAGT GAAAAAGATA 
GTGACGAACT GCTACGAGAG GGCGAAGGAG ATAATAAGGA AATACAGAAA ACAGCTGGAC 
AACATCGTGG AAATACTGCT GGAGAAAGAA ACGATAGAGG GAGACGAGCT GAGGAGTATT 
CTGTCTGAAG AGTTCGAAAA GGTGGTGGAA TGA 

 

Protein sequence

MNRSNIWNLL FTILIIVTLF WLARFFYVEN SPVSKLSYTS FVQMVEDERS VVSEVVIRDD 
GVLRVYTKDG RVYEVDAPWA VNDSQLIEKL VSKGIKVSGE RSGSSSFWIN VLGTLIPTIL 
FIVVWLFIMR SLSGRNNQAF TFTKSRATMY KPSGNKRVTF KDVGGADEAI EELREVVEFL 
KDPSKFNRIG ARMPKGILLV GPPGTGKTLL ARAVAGEANV PFFHISGSDF VELFVGVGAA 
RVRDLFAQAK AHAPCIVFID EIDAVGRHRG AGLGGGHDER EQTLNQLLVE MDGFDSKEGI 
IVMAATNRPD ILDPALLRPG RFDKKIVVDP PDMLGRKKIL EIHTRNKPLA EDVNLEIIAK 
RTPGFVGADL ENLVNEAALL AAREGRDKIT MKDFEEAIDR VIAGPARKSK LISPKEKRII 
AYHEAGHAVV STVVPNGEPV HRISIIPRGY KALGYTLHLP EEDKYLVTKS ELLDKLTALL 
GGRAAEEVVF GDVTSGAAND IERATEIARN MVCQLGMSEE LGPLAWGKEE QEVFLGKEIT 
RLRNYSEEVA SKIDEEVKKI VTNCYERAKE IIRKYRKQLD NIVEILLEKE TIEGDELRSI 
LSEEFEKVVE