Gene Tpet_0225 details

Gene Information

• Locus tag: Tpet_0225
• ID: 5170855
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thermotoga petrophila RKU-1
• Kingdom: Bacteria
• Replicon accession: NC_009486
• Strand: +
• Start bp: 220457
• End bp: 221134
• Gene Length: 678 bp
• Protein Length: 225 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 640562728
• Product: ABC transporter related
• Protein accession: YP_001243830
• Protein GI: 148269370
• COG category: [V] Defense mechanisms
• COG ID: [COG1136] ABC-type antimicrobial peptide transport system, ATPase component

Plasmid Coverage information

• Num covering plasmid clones: 41
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGATCGAGG TTCACAATCT GTGGAAGGAA TACAATGGGA AAGAGAAAGT AACAGCCTTG 
AAGGGTATAA ATCTAAGAAT AAACACGGGA GAGTTTGTTG TGATACTGGG CCCCTCCGGT 
TCTGGAAAGA CAACGCTTCT GAATTGTCTT TCTGGTGTGG ATCGCCCTAC AAGGGGAACT 
GTGATAATCC ATGGAACAGA CCTGTACACG CTCTCAGAAG AGGAAAGAAC GAGGTTCAGA 
GCGGAAAACA TGGGGTTTGT GTTCCAGTTC TTCAATCTCG TTCCTGTCCT CACCGCCATT 
GAAAATGTGG AACTACCTCT GCTCATTCTG GGTGTGAACA GAAAAGAGGC AAGAGAACGA 
GCCTTCGAAA TCTTGAGGAA AGTGGGGCTG GCTCACAAGT GCGACAGGTT CCCCGAAGAA 
CTCTCCGGAG GGGAAAAACA GCGTGTCGCC ATCGCGAGGG CCATCGTCCA CAATCCAAAA 
GTCATATGGG CAGATGAACC CACCGGTGCT CTGGACAACG AGACGGGGAG AATGATCATA 
GATCTTCTGA TGGAAATGAA GGAGAATTCC ACACTGGTGG TCGTGACTCA CGATGAAAGA 
ATAGCAGAGA AAGCGGACCG GGTTATAAGA ATAAGAGACG GTCAAATAGA ACAGGATATA 
TGTGAAAAAG CGTTGTAA 

 

Protein sequence

MIEVHNLWKE YNGKEKVTAL KGINLRINTG EFVVILGPSG SGKTTLLNCL SGVDRPTRGT 
VIIHGTDLYT LSEEERTRFR AENMGFVFQF FNLVPVLTAI ENVELPLLIL GVNRKEARER 
AFEILRKVGL AHKCDRFPEE LSGGEKQRVA IARAIVHNPK VIWADEPTGA LDNETGRMII 
DLLMEMKENS TLVVVTHDER IAEKADRVIR IRDGQIEQDI CEKAL