| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_0195 |
|---|
| Symbol | |
|---|
| ID | 5170571 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermotoga petrophila RKU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009486 |
|---|
| Strand | - |
|---|
| Start bp | 189358 |
|---|
| End bp | 190665 |
|---|
| Gene Length | 1308 bp |
|---|
| Protein Length | 435 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640562697 |
|---|
| Product | tRNA (uracil-5-)-methyltransferase Gid |
|---|
| Protein accession | YP_001243800 |
|---|
| Protein GI | 148269340 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1206] NAD(FAD)-utilizing enzyme possibly involved in translation |
|---|
| TIGRFAM ID | [TIGR00137] tRNA:m(5)U-54 methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 41 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCGTGA ATGTCATCGG AGCAGGGCTC GCGGGTTCAG AGGTGGCTTA CAACCTTGGA
AAAAGGGGAA TAAGGGTTCG TCTTTTTGAA ATGAGACCGA AGAAGATGAC TGAAGTGCAC
AAAACAGGAT ATTTCGCGGA GCTTGTTTGC AGCAACTCTC TCAAATCGGA AGACATAACG
AACGCCGAAG GACTCCTGAA AGCTGAAATG AAGCTGATGG GTTCTATAAC ACTAGAAGCT
GCAGAGAAAG CACGTGTCCC ATCTGGAAAG GCCCTCGCGG TGGATCGTAA CATCTTCGCG
AAGGAAGTGA CAGAGGCCAT AGAAAGTCTT GAGAGTGTGG AGGTCATCAG AGAAGAAGTA
ACCGAATTCG ATCCAGAAGA AGGATTATGG GTTGTAGCGA CGGGACCAGC CACATCGGAT
GGTTTATTCT CTTTTTTGAG AAACCTCCTC GGTGATGATT TTCTTTTCTT CTTCGATGCC
GTCTCTCCGA TTGTGACCTT TGAGTCGATA GACATGGAAC ACGCTTTCTG GGGAGACCGA
TTTGGGAAGG GAAAGGATTA CATAAACTGC CCTCTCACTG ATGGGGAATA CGAAGAACTC
TGGAAAGCAC TCGTTGAGGC CGAAGTTATA GAAATGGAGG ATTTCGATCG AAAGCTCCTC
TTCGAACGCT GCCAGCCCAT AGAAGAAATA GCGAGAAGCG GAAAAGACGC GCTGAGATAC
GGCCCTTTGA GACCAACAGG TCTGGTGGAT CCAAGAACGG GTAAAGAACC CTACGCAGTT
GTTCAGCTTA GAAGGGAGGA CAAAGAGGGT AGATTCTACA GTCTCGTTGG ATTTCAGACC
AGATTGAAAT GGAATGAACA GAAGAGAGTT CTGAGAAAGA TCCCTTGTCT CAGAAACGCC
GAGATCGTAA GGTACGGTGT CATGCACAGG AATGTTTACA TAAACTCACC AAAGTTGCTC
GATATCTTTT TCCGGCTGAA AAAGCAGCCT AACATCTTCT TCGCTGGTCA GATTACAGGG
GTGGAGGGAT ACATGGAATC CGCCGCGTCG GGAATCTACG TGGCTTACAA TGTCTATCGT
ATTTTGAAAG GACTCTCTCC GTTAAAACTT CCCGAGGAGA CCATGATGGG AGCGCTCTTC
AGTTATATAA TAGAGAAGGT CGAAGGAGAT CTGAAGCCGA TGTACGCAAA TTTTGGACTT
CTTCCTCCGC TGAAAACCCG TGTGAAAGAT AAATTCGGGA AAAGAAAAAA ACTCGCAGAA
AGAGCCATTG AAGCGATGAG AAAATTTCTG GAAGAGTATC CCTGGTGA
|
|---|
| Protein sequence | MIVNVIGAGL AGSEVAYNLG KRGIRVRLFE MRPKKMTEVH KTGYFAELVC SNSLKSEDIT
NAEGLLKAEM KLMGSITLEA AEKARVPSGK ALAVDRNIFA KEVTEAIESL ESVEVIREEV
TEFDPEEGLW VVATGPATSD GLFSFLRNLL GDDFLFFFDA VSPIVTFESI DMEHAFWGDR
FGKGKDYINC PLTDGEYEEL WKALVEAEVI EMEDFDRKLL FERCQPIEEI ARSGKDALRY
GPLRPTGLVD PRTGKEPYAV VQLRREDKEG RFYSLVGFQT RLKWNEQKRV LRKIPCLRNA
EIVRYGVMHR NVYINSPKLL DIFFRLKKQP NIFFAGQITG VEGYMESAAS GIYVAYNVYR
ILKGLSPLKL PEETMMGALF SYIIEKVEGD LKPMYANFGL LPPLKTRVKD KFGKRKKLAE
RAIEAMRKFL EEYPW
|
|---|
| |