| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_0122 |
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| Symbol | |
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| ID | 5171292 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermotoga petrophila RKU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009486 |
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| Strand | - |
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| Start bp | 116621 |
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| End bp | 119818 |
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| Gene Length | 3198 bp |
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| Protein Length | 1065 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640562623 |
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| Product | O-antigen polymerase |
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| Protein accession | YP_001243727 |
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| Protein GI | 148269267 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3307] Lipid A core - O-antigen ligase and related enzymes |
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| TIGRFAM ID | [TIGR01131] ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes) |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAGATTC TGTTTTACAT CATGTACGTT GTCGTTGCCC TTTTCTCGTC CAGGAAACTC
ACGTACGAGT TCAGCGTTCC AAAGTACGCT TTGATCACGG TGTTTCTGAG CGTCATGTTC
TTCATGATCC TGATGAAGAT TCTCAGGAAG GAGAAACTGG AAATCAGATT CAACATGGCC
CACGTGGCTT TTTTTGCCTT CGCTATCTCC GCTCTTTTAT CTACGATAAA TGTCTATCGC
GATAATCCTG TCTATTTCAG ATATTCCTTT GACATAGCGA TCTACGTTCT TCTCATGTTC
TTCACATCGA TCTTCATCTC GAACTTCTTT GTTACAAAGG AGAGAATAAG GAGATTCCTC
ACAGTCAGTG TGGCTCTTGC GGGATTCATA GCTTTCGACG CGCTTTTGAA CTTCTACGGC
GGTGTCGATG TTTTTCTTGG AAGTGTGGGG AGTCCCTTTT CGAGGGCAAC CGTGAAGGCG
ACCATAGGAA ACGTGAACTT CGTTTCGAAC TTTCTCTCCC TGAACCTTCC GCTCGCTATC
TATCTCATAG CGTCAGCCGA TTTCAAAAGA AAAGAAGCGT CCGTAATCAA AGTGATAGCT
TCAGTTTCTG CGCTTCTCAT AGTTTCGGGA ATACTGGTGT CTCAGACGAG ATCGCTGTAC
GTTGCGAACA TCATCTCCCT CTGTATTTTC TCTGTGTTCT ACATGATCTT CAGAAAAAAG
AAGGTTTCGA AAGAGACAGA CAGAGAAGTT CTGAGTATGA GTAAAGCTCT CACGACTTTC
GTTCTGATCG CTTCGATCGT CCTCGTTGTT CTCTACAATC TTCCCACTCC TCTGAACGGT
TACGGAATGG TATCTCCCGC AGGAAGAATT CAGGCGGTTG CCGAGGTGAG TTCCTGGCAC
GAGAGGCTTC TGTCCTGGTT CTCATCGATA TACCAGTGGA GAACACACAA GATTCTCGGT
ACCGGAATCG GAACGTATCA GATTCTCACG ATAAACTACA TGGGAGATGT TATAGAAGAC
CACCCGATTC TGATGTACGG CTGGAACAAC TTCAAGAGAA CGCACAACGA TTACCTTCAG
GTTCTTGGAG AAATGGGAAT TGTCGGATTT GTTTCCGTCG TCTTTCTCGC TCTGTCGCTT
GGGATACTGT TCTTCAAAAT AATTCGAAGG ATCACGGTAC GGGATGATCT CTTGCTCTTT
CTGACACTTG CCAGTTCTTT CATCACGTTC ATGATGCACA GCGCGTTCAG CTTTCCGGCG
CATCTACTTC CAAACGGTTT TCTTGTGATG ACAATTGCTT CCATAGCGGT TGGTGGGTAC
TTCTACGACG GAAGGAAAGT GGAGATTCAA CGAAAGAAGG TCGTTGTGTT TGGAACGATC
GTTCTTCTGG TTGGTGTCGT TTCCGCTTAC TTGAAATGGA ACTACTTCAT TTCTGAAGTT
TATTTCAAAT GGGGAAATTC TGCCTATCTT TCTATAAGGA AAGTGGAAGA AGACATGGCC
AAACTGGACA ACTACGAACA GCAGGTAAAG ACAGCCATGG AAGAGCTGAG CTCTCTGAGT
GGACGTTACA GTTACCTGAA ATCCGACGAA TTCAAGAAGT TCGTTGAAAG TCAGAACCTT
CCGGTGAAGC CTTCTAACCT GGAGATAGAA AGATTGAGGC TCGAGACCAT TCAAAAAGAA
AGGCAGAAGT TGCAGAACGC TCTTCAGCAG ATAGCATCTT ATAGGAATCA ACTCACGAAT
CAAAAAATAG AACTCTACAG GAAAGCGAAA GAGTACTTCT TGAAATCCGT TCAAGTGAAC
AAAACGTACG GAAGATCTTA TTTCTACCTT GCATCGCTTG CAACAAGCGA GTACCGAATC
GACGAATTGA AAGCGAAGCT GAAGACAAAA GAGGATTACA ATGCGTTTTT TGAACAGAAC
TTTGATGATT ACCAGAAGGT GGTCTTTTCG GATGTGAAGA AGACTGATCT GACGTTTCTT
GAGAACGCGA GTCTTTCCAC GATCAACGAT CTGGGAGAGG ACAATCTCAT CACCGCTCAG
GTCCTCCTCG ATTCCGTTTC TCTGTACCTT TCCTCTTTGA AGTCTTTCAA CGAGAGAAAC
ACATACAGAG GCCTTGCAAC AAGGTATGTA GGGCTTCACC AGATCATGAA GATTTTGTTC
TCGAAAGCCC AGGACGATCT GATACAGAAA GCCTTCGCTG AGTTGACATC AAGGTATTTC
GATAGTTTCA CGAATTACGC GAAGCTCACG GTGAAGATTC TTCCGGGTGC GTGGAACAGA
TTTCCCGACT GGAAACACTA CGATCTCAGG AAAGCCGTTG CGGGGCAGGA TATCTACAGA
TATTTCGCTA CGAAAGCTGC GGAAGCTCAA CCGCTCACCG TTCAGAAGAA CAGAGAGTTT
CTATTCTACC TTGCTAAAAA AGAAATCTGG GCAGTTGAAA GCATGAGCAA AGCGGGTGTC
TGGGGAGTTC CAGATGGTGT TCTCGATTTT CTGCATGCGA TGCCTTTCGA ATACGTCTCT
TCAAACAATC GTCAGGAGGC CTTGTTCGTA TCCGAAGACG TCCTGAAGAT TTACAATGAG
AGCTACAGAA ACGCAAAAGA ATCCATATCG CTGTACGAAA GTAGAGCAGA AAAGACATTT
GAAAGCGTTC TGGAGGAACT GAAGGAATAC CTCGAAAGTA ATCTGGGAAA AGAGTACGCG
AATCAATTCG AAAAACTCTT CAAGGACCTT TTTGAAAGCT TCAAGAATCT GAACTGGCTG
TCCATCAACG TTCAGGAAAT GAACAAATTC ATATCAGAGA AGAACTACAC GTACAAGTTG
AATCCATGGG CAGAACTTCT CGTAGAAAGG ATGAAAAACT TCGAAAGCTA TATGAAGCAA
AAAAATGTTG AAGCTTCCAG AATCAGCGAA GTGCTTTCCA GGATCTACAA CGATCTGTAC
GAACTCAGAG ATGTTCTTGT TTTCGAAAGA TACATAAGAT TCCTCGAACA CTACAGGCTC
ATTCTGAACG ATGCAAGGAA CTTCTTGAGA ACTCTGGAAA AAGCCTACAG CGTAGCTTCT
GATGAGGAGT GGAAGATGAT ACTGGAAGAC TGGAGCGTGA ACCTCTGGAA CGATGAAAAG
TTCGAAACAA AAGATCAAGT GATGGAACGA TTGAAGAAAT CAGAAGAATT TTTGAAAACG
ATAGAAGAAA GCTTGTAG
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| Protein sequence | MEILFYIMYV VVALFSSRKL TYEFSVPKYA LITVFLSVMF FMILMKILRK EKLEIRFNMA
HVAFFAFAIS ALLSTINVYR DNPVYFRYSF DIAIYVLLMF FTSIFISNFF VTKERIRRFL
TVSVALAGFI AFDALLNFYG GVDVFLGSVG SPFSRATVKA TIGNVNFVSN FLSLNLPLAI
YLIASADFKR KEASVIKVIA SVSALLIVSG ILVSQTRSLY VANIISLCIF SVFYMIFRKK
KVSKETDREV LSMSKALTTF VLIASIVLVV LYNLPTPLNG YGMVSPAGRI QAVAEVSSWH
ERLLSWFSSI YQWRTHKILG TGIGTYQILT INYMGDVIED HPILMYGWNN FKRTHNDYLQ
VLGEMGIVGF VSVVFLALSL GILFFKIIRR ITVRDDLLLF LTLASSFITF MMHSAFSFPA
HLLPNGFLVM TIASIAVGGY FYDGRKVEIQ RKKVVVFGTI VLLVGVVSAY LKWNYFISEV
YFKWGNSAYL SIRKVEEDMA KLDNYEQQVK TAMEELSSLS GRYSYLKSDE FKKFVESQNL
PVKPSNLEIE RLRLETIQKE RQKLQNALQQ IASYRNQLTN QKIELYRKAK EYFLKSVQVN
KTYGRSYFYL ASLATSEYRI DELKAKLKTK EDYNAFFEQN FDDYQKVVFS DVKKTDLTFL
ENASLSTIND LGEDNLITAQ VLLDSVSLYL SSLKSFNERN TYRGLATRYV GLHQIMKILF
SKAQDDLIQK AFAELTSRYF DSFTNYAKLT VKILPGAWNR FPDWKHYDLR KAVAGQDIYR
YFATKAAEAQ PLTVQKNREF LFYLAKKEIW AVESMSKAGV WGVPDGVLDF LHAMPFEYVS
SNNRQEALFV SEDVLKIYNE SYRNAKESIS LYESRAEKTF ESVLEELKEY LESNLGKEYA
NQFEKLFKDL FESFKNLNWL SINVQEMNKF ISEKNYTYKL NPWAELLVER MKNFESYMKQ
KNVEASRISE VLSRIYNDLY ELRDVLVFER YIRFLEHYRL ILNDARNFLR TLEKAYSVAS
DEEWKMILED WSVNLWNDEK FETKDQVMER LKKSEEFLKT IEESL
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