| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_0119 |
|---|
| Symbol | |
|---|
| ID | 5171269 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermotoga petrophila RKU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009486 |
|---|
| Strand | - |
|---|
| Start bp | 113168 |
|---|
| End bp | 114571 |
|---|
| Gene Length | 1404 bp |
|---|
| Protein Length | 467 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640562620 |
|---|
| Product | glycoside hydrolase family 3 protein |
|---|
| Protein accession | YP_001243724 |
|---|
| Protein GI | 148269264 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1472] Beta-glucosidase-related glycosidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGACGTGG ATCTTGGAAA GCTGTTCTTC TGCGGTTTCA ACGACTTCAA CGAAGAAGTC
AAGGAAATAA TCAGAAAATA CAGACCGGCC GGTATTTTGA TCTATCCAGG AGTTCTTTCG
AAAGAGTACC TTCTAATGGA TTTCATGAGT TTTCTATCGA AGGAAGGAGA TTTTCTCGTC
AGTTCCGATC ACGAGGGTGG CCAGCTTGAG GTGTTGAAAT ACGTTCCCTC GTCTCCGGGA
AATCTTGCCT TTGGGAAAAA CTCACCAGAT GTGACTTACA GATATTCCAA GATCGCAGGA
AAGATCATGG AGATTGTGGG GTTCAACATG GTTTTTGCTC CTGTTCTGGA TCTTCTTTCT
GAGGAAAGCT CTTCGGTGAT CGACATGAGA AGCTACGGCT CAGATCCCAA AATCGTAGCC
GAGCACGGGG CAAAAGCCTG TGAAGGTTAT CTGGAAGGTG GAGTTATGCC CTGCATCAAG
CACTTTCCAG GTCACGGAAG AGCAAGAGAA GACTCTCACC TCACCCTTCC TGTGGTCGAT
GCACCCTTTG AAAAACTCTG GGAAGAGGAT CTTCTGCCGT TCAGAAAGGT GCTGGAAAGG
GAGAAAAAGG TCACGGTCAT GACGGCCCAC GTCAGATACT CTTCGATAGA CAGTCTCCCG
GCTACTCTTT CGGAGAAGAT CATAACGGAC GTTCTCAGAA AAAAGATCGG TTTCGACGGT
CTTGTGATCA GTGACGCTAT GGAAATGAGC GCTGTGTCGA ACAATTTCTC TGTTGAAGAG
ATTGTGAGTC TCTTTCTGAA CGCGGGAGGA AACATGATCC TTCTCGGTGA TTACAGAAAT
CTTCCGGTTT ACTATGAAAC GCTGGTGAAA CTCCTCGAGG ATGGAAAGGT CCAGAAGGAC
AAAGTGGAGC GCTCCATAAG GATGGTGGAA AAATATCTTG CTTTTGCGAA GAAAAACAGC
GGTGTTGGTT TCCTCGCCGA TTCTTCGGCA AAGGCTGTGG AATTCCTCGG TTTTGAAAAG
ATAGATCATA CCAGTGAAGT GACTCTTCTC GTTCCTTCCA GTGAGAATCT GAGTCAGGCA
GACACCACGG GGGGCGATTA CGATCAGATT CCAGAGATCG TTTCCAGATT TTTCGAAGTC
GAGAATGTTG TTCGATACAC CGTAGAAGAC GGTCCCGAGT TCGTTGAAGG TGATTTGATC
TTCGATTTTG TAGCCGACAT ACCGAACGAA AAGGCTTTGA AAGCCCATCT GAGCCTTCCG
GCAGAAAAGA CCGTTTACTT CGTTCTGAGA AATCCGTTCG ATGTCAGGTA TTTCGAGGGA
AGAAAGATAG TCGTCACAAG ATCGACGAAA CCCATTTCTA TCTATAAATC CTTAGAACAT
TTTTTAGGGA GGTGTGATTC ATGA
|
|---|
| Protein sequence | MDVDLGKLFF CGFNDFNEEV KEIIRKYRPA GILIYPGVLS KEYLLMDFMS FLSKEGDFLV
SSDHEGGQLE VLKYVPSSPG NLAFGKNSPD VTYRYSKIAG KIMEIVGFNM VFAPVLDLLS
EESSSVIDMR SYGSDPKIVA EHGAKACEGY LEGGVMPCIK HFPGHGRARE DSHLTLPVVD
APFEKLWEED LLPFRKVLER EKKVTVMTAH VRYSSIDSLP ATLSEKIITD VLRKKIGFDG
LVISDAMEMS AVSNNFSVEE IVSLFLNAGG NMILLGDYRN LPVYYETLVK LLEDGKVQKD
KVERSIRMVE KYLAFAKKNS GVGFLADSSA KAVEFLGFEK IDHTSEVTLL VPSSENLSQA
DTTGGDYDQI PEIVSRFFEV ENVVRYTVED GPEFVEGDLI FDFVADIPNE KALKAHLSLP
AEKTVYFVLR NPFDVRYFEG RKIVVTRSTK PISIYKSLEH FLGRCDS
|
|---|
| |