Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tpet_0041 |
Symbol | |
ID | 5170891 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermotoga petrophila RKU-1 |
Kingdom | Bacteria |
Replicon accession | NC_009486 |
Strand | + |
Start bp | 35569 |
End bp | 37500 |
Gene Length | 1932 bp |
Protein Length | 643 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640562539 |
Product | glycosyl transferase family protein |
Protein accession | YP_001243646 |
Protein GI | 148269186 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00000612567 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGAAAT TCCTTTTATC CTTCTTCATA GCTTCACTTT TGACTTTTTT CTTACTGTGG GGTCTTTATT TCTTCTTCAC AAAAGACCTT CCTCCTCCCG AGGAGAAACT TGTGCCGACC ATCAGACTGT TTTACAGTGA CGGAACTCCA CTGCTTGTCT CCAGGAATAT CTGGATAGAC CTCTCCGACA TTCCAGAGAA ATTCGTTGAG ATACTCCTCA CCTCCGAGGA CGAGGAATTC TACAAACATC CAGGATTCGA CCTCATGGGA TTTCTGAGGG CGTTGATCAT TGATATAAAG ACACTGAGTT TCTCACAGGG CGGAAGCACC ATCACACAGC AACTCGCCAG GACGCTTTAT CTTTCGATGG ACAAATCCAT CGTCAGGAAA TTGAAGGAAA TCTTCATATC CTTCTGGCTT GAACGCATAA GAACCAAAGA TGAAATCCTC GAGATGTACA TAAACTCCGT CTATATGGGA AACGGAATAT ACGGATTCCA AACGGCCTCT AAATTATACT TCGGAAAGGA CCTCTCTGAT CTTTCGGTGC CGGAGATGTG TGTTCTTGTG GCTCTGATCA AATCCCCCGA GAACTTCAAT CCTTTAAAAG ATCCCGAGAC CTCCCGAAAG AGGGCGAAGA TCGTCCTGGA CAGGTTACTG ACGGAGAAAA GAATCAGCAC TCAGGAATAC GAGAATTACT CTGCGGAACT TTCAAAACTC GAGTTTCACA CACAGCAGAT GAACGTGGAC GAGGAACTCT TCTGGAGGGT CGTGAGAGAA GCCCAGGACC TTGGATTTTC GCTGAACGAA CTCAGGTACG GCTACAGGGT TTATCTCACA TTGGATAAAG AACTTCAGAA AAAGGTGTAC AACACGGTCG AAGATGATAA GACAGCTTTT GTTGGTGTGA AGGTGAAAAC AGGAGAGATA GTGGCTTATC GAGGAGTCGG CCTTCAATAC GGAACCGGAT GGAGACAGAT AGGATCAGCC ATAAAGCCCC TGTATTATTA CTATGCCGTT CTCAAGGGAA GAAACCCTTC CGATCTTCTT TTAGATCTTC CCCTGAAGAT CGGAGAGTGG GAACCAGAAA ACTTCGATAA AACTTTCAAA GGATCAGTCA GTTTGAAGGA AGCGCTCGTC GACTCGAGGA ACATTCCTTC TGTGTTACTT TACTCGTATT TGCAACCAGA GAGTGTGAGA AATTTTATAA CGGAAGTATT GAAGCTGAGA GCCAGATATC CAGACGACCT CACCGCTTCC CTCGGTACCG TGGAAACCGC CCCGGAAGAA GTTGTGAAGG TTTATTCAGC CATCTTCAAC GGAGGAGTGG TTCTGGAACC GTACATCATC GACAGAATAG AAGACAGAAA CGGAAAGATC GTCTACAGAG GATACCCAAA AGTCCTGTCC GTCGTTCCGT CTTTCGTGAG ATCCCCTCAG GAAGCGAGTG AAATATTGAA GGGTATTTTA AAGGAAGTGG TTGAGAGAGG CACCGGTGTT CGGGCAAAGA TTCCGGGAAA AGAAATCGCG GGAAAAACAG GAACGGCAGA AAAGAACGCC TGGTTCATTG GAGGAGATGA TGATTACATC TTCGCGGTGG TGAAGGACGG GGAAAACCTT CTTGGTGGAA GAGATTGCGC TCCAGTGTGG AAAGAAATAG CGAGCAGCTG GGAGAAGTTC GAGGGAGATC TTCGATACAA AAGGCTGGAC AAACCGGGAA TTTCTCTTAT TGACGATAGA ACAATAGAAT ATCTGGACTA CGCGAGACTG GTTGAACTGG TCAATGGGTC AAAACTTCCT GTAAGCGTTC TGGTCAAAAT TCTACAGCTC ATGGGCTACA ATCATCAGAT TGAGTTCCTC TCAAAATTGA ACAGCGTGGA TCCGATACTG TCCCTTGAAA TCTGGAAAAA GTTTTTGATG GAAGGAGGTT GA
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Protein sequence | MKKFLLSFFI ASLLTFFLLW GLYFFFTKDL PPPEEKLVPT IRLFYSDGTP LLVSRNIWID LSDIPEKFVE ILLTSEDEEF YKHPGFDLMG FLRALIIDIK TLSFSQGGST ITQQLARTLY LSMDKSIVRK LKEIFISFWL ERIRTKDEIL EMYINSVYMG NGIYGFQTAS KLYFGKDLSD LSVPEMCVLV ALIKSPENFN PLKDPETSRK RAKIVLDRLL TEKRISTQEY ENYSAELSKL EFHTQQMNVD EELFWRVVRE AQDLGFSLNE LRYGYRVYLT LDKELQKKVY NTVEDDKTAF VGVKVKTGEI VAYRGVGLQY GTGWRQIGSA IKPLYYYYAV LKGRNPSDLL LDLPLKIGEW EPENFDKTFK GSVSLKEALV DSRNIPSVLL YSYLQPESVR NFITEVLKLR ARYPDDLTAS LGTVETAPEE VVKVYSAIFN GGVVLEPYII DRIEDRNGKI VYRGYPKVLS VVPSFVRSPQ EASEILKGIL KEVVERGTGV RAKIPGKEIA GKTGTAEKNA WFIGGDDDYI FAVVKDGENL LGGRDCAPVW KEIASSWEKF EGDLRYKRLD KPGISLIDDR TIEYLDYARL VELVNGSKLP VSVLVKILQL MGYNHQIEFL SKLNSVDPIL SLEIWKKFLM EGG
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