Gene Tpet_0038 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTpet_0038 
Symbol 
ID5171559 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermotoga petrophila RKU-1 
KingdomBacteria 
Replicon accessionNC_009486 
Strand- 
Start bp33380 
End bp34510 
Gene Length1131 bp 
Protein Length376 aa 
Translation table11 
GC content47% 
IMG OID640562536 
Product1-deoxy-D-xylulose 5-phosphate reductoisomerase 
Protein accessionYP_001243643 
Protein GI148269183 
COG category[I] Lipid transport and metabolism 
COG ID[COG0743] 1-deoxy-D-xylulose 5-phosphate reductoisomerase 
TIGRFAM ID[TIGR00243] 1-deoxy-D-xylulose 5-phosphate reductoisomerase 


Plasmid Coverage information

Num covering plasmid clones6 
Plasmid unclonability p-value0.000153353 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAGAAA GAACCCTCGT GATACTGGGT GCCACTGGAT CCATAGGAAC TCAGACACTC 
GATGTTTTGA AAAAAGTGAA GGGAATTCGA TTGATAGGCA TCTCGTTTCA CAGCAATCTG 
GAGCTGGCCT TCAAGATCGT GAAGGAATTC AACGTGAAAA ACGTGGCGGT CACGGGTGAT 
GTGGAGTTCG AAGACAGTTC GATCAACGTC TGGAAAGGTC CTCATTCCAT AGAAGAGATG 
CTGGAAGCGC TGAAGCCTGA CATCACAATG GTAGCAGTTT CGGGATTCAG TGGATTGAGG 
GCGGTGCTTT CGTCTCTGGA GCACTCGAAA AGGGTGTGCC TTGCAAACAA AGAATCTCTC 
GTGTGCGGCG GATTTCTGGT GAAGAAAAAA CTCAAAGAGA AAAGAACTGA ACTCATTCCG 
GTCGATAGTG AACACAGTGC CATCTTTCAG GTGATAGAAC CAGAAGTGGA AAAGGTGGTT 
TTGACAGCTT CTGGAGGTGC TTTGAGAGAC TGGGAGATTT CCAAGATCGA TAGAGCAAGA 
CCTGAAGACG TGCTCAGGCA TCCCGTGTGG AATATGGGAG CCCGTATAAC GGTAGATTCT 
GCAACAATGG TGAACAAGGC GTTCGAAGTT CTGGAAGCCA TGGAGCTCTT CGAGCTGCCC 
TTCGAGAAGA TAGAAGTGAA GATACACAGA GAGGGGCTGG TTCACGGAGC GGTGGTTTTG 
CCCGATGGAA ACGTCAAAAT GGTGGTATCA CCACCGGATA TGAGAATACC GATAAGTTAT 
GCTCTTTTCT ATCCGAGACG CGTCGCTCTT GAACCGTTTT TTCTGAGGAC CATCAGCCTT 
TCTTTTGAAG ATCCCGATCC CGAAAAATAC CCTGCGTTCT TTCTTCTGAA AGAGATAAAG 
GATTCTTACG CTCTGAGAAC AGCTTTCAAC GCGGCGGACG AAGTAGCGGT CGAAGCCTTT 
CTGAAAGGGA GAATAAGGTT CGGTGGTATC CACAGAGTGA TAGAGAAAAC TCTCGAAGAG 
TTTCAAGGAT ATCCACAACC GCGAACGCTG GATGATGTGG AGCGAATTCA TTTCGAAGCG 
ATAAAAAAAG CGGAGAGGGT GACAGAATGG TTATCGTCTA CTTCATATTG A
 
Protein sequence
MEERTLVILG ATGSIGTQTL DVLKKVKGIR LIGISFHSNL ELAFKIVKEF NVKNVAVTGD 
VEFEDSSINV WKGPHSIEEM LEALKPDITM VAVSGFSGLR AVLSSLEHSK RVCLANKESL 
VCGGFLVKKK LKEKRTELIP VDSEHSAIFQ VIEPEVEKVV LTASGGALRD WEISKIDRAR 
PEDVLRHPVW NMGARITVDS ATMVNKAFEV LEAMELFELP FEKIEVKIHR EGLVHGAVVL 
PDGNVKMVVS PPDMRIPISY ALFYPRRVAL EPFFLRTISL SFEDPDPEKY PAFFLLKEIK 
DSYALRTAFN AADEVAVEAF LKGRIRFGGI HRVIEKTLEE FQGYPQPRTL DDVERIHFEA 
IKKAERVTEW LSSTSY