Gene Tpet_0036 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTpet_0036 
SymbolispG 
ID5170288 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermotoga petrophila RKU-1 
KingdomBacteria 
Replicon accessionNC_009486 
Strand- 
Start bp30868 
End bp31902 
Gene Length1035 bp 
Protein Length344 aa 
Translation table11 
GC content47% 
IMG OID640562534 
Product4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 
Protein accessionYP_001243641 
Protein GI148269181 
COG category[I] Lipid transport and metabolism 
COG ID[COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis 
TIGRFAM ID[TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 


Plasmid Coverage information

Num covering plasmid clones8 
Plasmid unclonability p-value0.00218078 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGAAAGA GTGTGAAAGT CGGGAACGTG GTGATCGGAG GAGGCGCCCC CGTGAGTGTT 
CAGTCTATGA CCACGACGAA GACGGCCGAC GTGGAAAGAA CCATCTCCCA AATAAAACGC 
CTTGAAAGGG CTGGTTGTGA GATCATTCGG GTGGCCGTTC AAGATGAAGA AGATGCGAAA 
GCAATCAGAC GAATAAAGGA ACAGATAGAG ATTCCCCTTG TTGCGGATAT TCAGTTCGAT 
TACAGGCTTG CTATTCTTTC GATTGATAAT GGAGCAGACA AAATAAGGAT CAATCCAGGT 
AATATGAGTA GGGATCGGCT GAAGGATGTC GTCGCGGCTG CGAAAGGAAA AGGCATTCCC 
ATTCGTGTTG GAGCGAACGT GGGATCCATA AAGAGAAGAA CCTCAGAAAG GTGGAAAGAT 
CTGGCAGAAT CCGCTCTCGA GGAAGTCAGA CTACTCGAGA AGGAAGGGTT CTATGATATC 
GTCGTCTCGG TGAAGAGCTC AGATATACTC GAAACGATAA AGGCGAACGA GTACATTGCT 
GAAAAGATCG AATATCCCAT CCATCTTGGG GTGACCGAGG CGGGAGTTTC GGAAACGGCC 
GTTGTTAAAT CCTCCATTGC TATAGGTCAT CTCCTTCTGA AAAACATAGG TGACACCATA 
AGGGTATCCA TATCTGGAGA TCCAGTGAGG GAGGTTATCG TCGGAAAGAA AATCCTCATA 
GCCCTCGGTC TCAGGGAAGG TGTGGAGGTG ATAGCCTGCC CCACTTGTGG CAGAGCAGAA 
ATAGATGTCG AAAACATGGC GAAGATGATC GAAGAGAATT TCTTTCACGT TCAAAAGAGA 
TTGAAAATAG CTGTTATGGG ATGTGTTGTG AACGGTATTG GAGAAGGAAA AGATGCCGAT 
CTGGGAGTGG CCGGTCTCAG GGATGGAGCT GTTATATTCG TGAAGGGAGA GATAAAAGAA 
CGTGTTTCAA AAGAGTTCGT TCTGGAACGT CTCAAACACT ATCTGAATGA ACTACTCGAG 
GAGGTGGAAC GATGA
 
Protein sequence
MRKSVKVGNV VIGGGAPVSV QSMTTTKTAD VERTISQIKR LERAGCEIIR VAVQDEEDAK 
AIRRIKEQIE IPLVADIQFD YRLAILSIDN GADKIRINPG NMSRDRLKDV VAAAKGKGIP 
IRVGANVGSI KRRTSERWKD LAESALEEVR LLEKEGFYDI VVSVKSSDIL ETIKANEYIA 
EKIEYPIHLG VTEAGVSETA VVKSSIAIGH LLLKNIGDTI RVSISGDPVR EVIVGKKILI 
ALGLREGVEV IACPTCGRAE IDVENMAKMI EENFFHVQKR LKIAVMGCVV NGIGEGKDAD 
LGVAGLRDGA VIFVKGEIKE RVSKEFVLER LKHYLNELLE EVER