| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_7744 |
|---|
| Symbol | trbE |
|---|
| ID | 5149703 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 8134763 |
|---|
| End bp | 8137201 |
|---|
| Gene Length | 2439 bp |
|---|
| Protein Length | 812 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640562384 |
|---|
| Product | conjugal transfer ATPase TrbE |
|---|
| Protein accession | YP_001243491 |
|---|
| Protein GI | 148258906 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
|---|
| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.110925 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGAACC TCGCCGAATA TCGCCGCACG TCTTCGCGCC TCGCCGACTT CCTGCCGTGG
GCAGCGCTCG CCGCAGAGGG CGTCGTCCTC AACAAGGACG GCAGCTTCCA GCGCACGGCA
CGCTTCCGCG GCCCCGACCT CGACTCCTCC GTGCCGGCCG AGCTGGTCGC CGTCGCGGGC
CGCCTCAACA ACGCCTTCCG GCGCCTCGGC TCCGGCTGGG CGATCTTCGT CGAGGCGCAG
CGTCACGGCG TCGGCGCCTA TCCGTCGAGC CGCTTTCCCG ATGCCGCGTC TGCGCTGGTC
GACGCCGAGC GCAAGGCGGA CTTCGAGGAA GCGAGTGCGC ATTTCGAGTC GAGCTACTTC
CTCACCTTCA CCTACCTGCC GCCGGCCGAG GACGCCGCGC GCGCCGAGAA CTGGCTCTAC
GAGGGCAAGG CCGACCGCGG CGTCGATCCG CACGAGATCC TAAGCGGCTT CGTCGACCGC
ACGGATCGCG TCCTGCAGCT CATCGAAGCC TTCATGCCCG AATGCGCCTG GCTCGATGAC
GGCGAGACGC TGACCTACCT GCATTCCTGC ATCTCGACCA GGCGCCATCG CGTGCGCGTG
CCCGAGACGC CGATATATCT CGACGCGTTA TTGGCCGACC AGCCGCTGAC GGGAGGCCTC
GAGCCGCGGC TCGGCGACGC ACACCTTCGC GTGCTCACGA TCGTCAGTTT TCCGACGGCA
ACCACGCCGG GCATTTTGGA TGAGCTGAAC CGGCTGGCGT TTCCTTATCG CTGGGCGACG
CGCGCGATCC TGCTCGACAA GACCGACGCA ACCAGGCTGC TGACCAAGAT CCGCCGGCAA
TGGTTCGCCA AGCGCAAGAG CATCGCGGCG ATCCTGAAGG AGGTAATGAC CAACGAGGCC
TCGGCTCTCG TCGACACCGA TGCCGCGAAC AAGGCGGCCG ACGCCGACCT CGCGCTCCAG
GAGCTCGGCG CCGACTACGC CGGCGAGGCC TATGTCACCG CGACGGTGAC GGTCTGGGAC
GATGACCCCC GCATCGCCGC CGAAAAGCTG CGGCTGGTCG AGAAGGCCAT CCAGGGCCGC
GACTTCACCG CGATGCCCGA GACGATCAAT GCCGTGGACG CCTGGCTCGG CTCGCTGCCG
GGGCATGTCT ACGCCAACGT GCGCCAGCCG CCGATCTCGA CCCTCAACCT CGCCCACATG
ATCCCGCTGT CGGCGGTGTG GGCGGGGCCG GAACGGGATG AGCACTTCGG TGCACCCACC
TTGCTGTTCG GCAAGACCGA AGGGTCCACC CCGTTCCGGT TCTCTTTGCA TGTTGGTGAC
GTCGGTCACA CGCTCGTCGT CGGCCCGACC GGCGCCGGCA AGTCGGTGCT GCTGGCGCTG
ATGGCCCTTC AGTTCCGGCG CTATTCCCGC TCGCAGGTCT TCGCCTTCGA CTTTGGCGGT
TCGATCCGCG CCGCCGCGCT CGCCATGGGC GGCGACTGGC ACGACCTCGG CGGCGGTCTC
ACGGACGGGT CCGCCGAGAG CGTTTCGCTG CAGCCGCTCG CCGGCATCCA CCATGTCCCC
GAACGCGCCT GGGCCGCCGA CTGGATCGTC GCGATCCTGA TGCGCGAGGG CGTGGCGATC
ACACCCGAGG TCAAGGAGCA TCTCTGGACC GCGCTGACCT CTCTTGCCAG CGCTCCCGTC
GTCGAACGCA CGATCACCGG CCTCGCGGTG CTCCTGCAAT CAAACGATCT CAAGCAGGCG
CTGCGGCCCT TTTGTGTCGG CGGGGCCTAT GGCCGCCTGC TCGACGCCGA GCACGAGCAT
CTCGGCGAGG CATCGGTCCA GGCCTTCGAG ACCGAGGGCC TGATCGGCAC CGGCGCGGCG
CCGGCCGTGC TCGCCTATCT GTTTCACCGC ATCGAGGATC GCCTCGACGG GCGGCCGACC
TTGCTGATCG TCGACGAAGG CTGGCTGGCG CTCGACGACG AAGGCTTCGC GGGCCAGCTC
CGGGAGTGGC TGAAGACGCT CCGAAAGAAG AACGCCAGCG TCGTCTTCGC CACGCAGTCG
CTTTCCGACA TCGACAATTC ACCGATCGCG CCGGCCATCA TCGAGAGCTG CCCGACGCGA
GTGCTGCTCC CGAACGAGCG GGCGATCGAG CCGCAGATCA CTGCGATCTA CCGCAGGTTC
GGGTTAAACG ATCGCCAGAT CGAAATCCTC GCGCGCGCGA TGCCGAAGCG CGACTACTAC
TGCCAGTCGC GACGCGGCAA CAGGCTCTTC GAACTCGGCC TCTCCGACGT CGCTCTCGCC
CTGTGCGCCG CGTCCTCCAA GGCCGATCAA GCCGCCATCG AGCGCATCGT CGCCGAACAT
GGCCGTGAGA ATTTCCTGCC GGCATGGCTG CACCTGCGCG GCGTCGCGTG GGCCGCCGAT
CTCATCCCAA ACCTCACCAA CCTGGAGACA CAATCATGA
|
|---|
| Protein sequence | MMNLAEYRRT SSRLADFLPW AALAAEGVVL NKDGSFQRTA RFRGPDLDSS VPAELVAVAG
RLNNAFRRLG SGWAIFVEAQ RHGVGAYPSS RFPDAASALV DAERKADFEE ASAHFESSYF
LTFTYLPPAE DAARAENWLY EGKADRGVDP HEILSGFVDR TDRVLQLIEA FMPECAWLDD
GETLTYLHSC ISTRRHRVRV PETPIYLDAL LADQPLTGGL EPRLGDAHLR VLTIVSFPTA
TTPGILDELN RLAFPYRWAT RAILLDKTDA TRLLTKIRRQ WFAKRKSIAA ILKEVMTNEA
SALVDTDAAN KAADADLALQ ELGADYAGEA YVTATVTVWD DDPRIAAEKL RLVEKAIQGR
DFTAMPETIN AVDAWLGSLP GHVYANVRQP PISTLNLAHM IPLSAVWAGP ERDEHFGAPT
LLFGKTEGST PFRFSLHVGD VGHTLVVGPT GAGKSVLLAL MALQFRRYSR SQVFAFDFGG
SIRAAALAMG GDWHDLGGGL TDGSAESVSL QPLAGIHHVP ERAWAADWIV AILMREGVAI
TPEVKEHLWT ALTSLASAPV VERTITGLAV LLQSNDLKQA LRPFCVGGAY GRLLDAEHEH
LGEASVQAFE TEGLIGTGAA PAVLAYLFHR IEDRLDGRPT LLIVDEGWLA LDDEGFAGQL
REWLKTLRKK NASVVFATQS LSDIDNSPIA PAIIESCPTR VLLPNERAIE PQITAIYRRF
GLNDRQIEIL ARAMPKRDYY CQSRRGNRLF ELGLSDVALA LCAASSKADQ AAIERIVAEH
GRENFLPAWL HLRGVAWAAD LIPNLTNLET QS
|
|---|
| |