| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_7687 |
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| Symbol | |
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| ID | 5154523 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bradyrhizobium sp. BTAi1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009485 |
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| Strand | + |
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| Start bp | 8085023 |
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| End bp | 8088166 |
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| Gene Length | 3144 bp |
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| Protein Length | 1047 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640562328 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001243436 |
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| Protein GI | 148258851 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0327995 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.497822 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCGATCAT TGATTTCCTC CCGGGTCGAT CCAGGCATGC AACGCGCAGC AGACACGTCA
GGGGCGGTCG AGACCGAGCC AACGCGGCTG GGCACGTCGA TCTGGCGCGG TCCGGTGCCG
TGGCTCGCGG CCTGTGGCGC GCTCCTCATT GCAGCCATCG TGATCGGAAC GCTCGTGATG
GCCAATGGCT TCAAAGACCG CACGATCGGC AATAATGAGC GCGAGCTCGA AAATACCGTC
TTGTTGCTCA GCCGGCATTT CGCGCAGCAG TTCGAGGATG CCGACACCGC GGTCTCTCAC
GCGGTCCACC GCATGCAGCT CGGATCGATC GACTCGCCCG AGGCCTTCCG CTCGCGCATG
GCGCGGCCCG AGATTCGCGA GATGCTGCAG TCGCAGATCA ATGGCCTGTC CTATATGGGC
GACCTGACGA TCATCGGCGC CGATGGCAGC TTCATCAACT GGTCGGAAAA CAGAGAGGTC
CCGGCGATCA ACGTCGCAGA CCGCGAATAT TTCAAGACCC TCGCTGACAG TCAGCAGTCC
GACGCCGTCA TCATTGCACC GGTCGTGAGC TATGTCACCG GCAAATGGGC CACCATCGTC
GCCCACCGCT TGAGCGGTGC CAACGGTGAA TTCCTCGGCC TGCTGTCGCG CCGCGTCGAT
CCGAAAACCT ACGAGAAATT CCTGGAATCG ATGTCGCTCG GCAATGGCGC TTCGATCACG
CTGTTCCACG CCGACGGCAC GGTGCTCGCG CGCTACCCGC ACAGCGAGGC CGTCATCGGG
CGCCGGGTCG GAGGAAATGG CGGGCTGCTC AGCAGCGTCG CTGACGGCGC GGTCCACACC
GCGCTGGTTA CGAGCCCCTT CGACGACCTC GATAAGATTG CTGCCGGAGC CAGGGTCAGC
CGCTTCCCGC TGACGATCAC CGCGACGCGG ACGATCGACG ACGCGCTCGC GGACTGGCGT
TCTCAGGTGG TCCTGCTGGT CGGCGCCGCG ACGCTGGCGG CCGGCGTCAT TGCCGTGATG
TTCAGCCTGA TGATCAGGCA GATCCTGCGG CAGAACCGGA TCGCCCGGCA ACAGCTCGAA
GGCGAGAAGC AACGCGTCGA GACGGCGCTC GACAACATGA CACAAGGGCT GATCTCGTTC
GATGCCGACG CATGCGTCGT GATGTTCAAT CGACGCTTCA TCGATATGCT CGGCCTGTCC
ACCGATGTGA TCAGGCCGGG CGTCCACCTC ACTGAGGTCA TCGCCCATTG CAAGGCGCAG
GGATCCTTCA ACGGGGATGT CGCCGACTTC TGCACCGCCA TCCACGATCG GGCGGCCGCG
GGCGGCACCT CGCAGATGGT CATCGAAGCG GGTGCGGGAC GGTTCCTCAA CGTCATCGAC
AAGCCGCTGG CCACCGGCGG CTGGGTCACG ACCCTCGAGG ACATCAGCGA GCATCGCAAG
CTCGAGCAGG AGCGCGATCG CAATTACGCA TTCCTGCGCG AGATCATCGA TCACATTCCC
TCGCCTATCA TGGTCAAGGA TGTCCAAGAC CGCCGTTACG TACTGGTCAA CAAGTCATCC
GAGCGGTGCT TCGGCCGGCC GTGCGAGCAG ATCGTCGGCA AGACGCTATT CGACCTGATG
CCCCGGCCGA TCGCGGAAAA GGCCGCCGCC GATGACGACC GGGCGCTGGA GCATGCGGAC
GGGCTGGTTC TCGAGGAGCA TCCGTGGCAG ACGCCCGGCC TCGGCTTGCG CTATATCACC
TCGCGCCGGA TCGTCGTCAC CGACGACAGG CAGCGGCCGC GTTATCTGAT CAACGTGATC
GAGGACACCA CTGAACGGCG GCTGGCTGAT GAGAGGATTG CCCATCTCGC CCATTACGAC
GCGCTGACCG AGCTGCCGAA TCGTGTCCTG TTCCGGGAGC GTATCGCCCA CGAGATCGAG
CGCGCGCGGC ACGGCATGTT CTTCGCGCTG CTTTATCTCG ACATCGATGA GTTCAAGGGC
ATCAACGACT CGCTTGGACA TCACGTCGGC GACGAGCTGC TGAGGACGAT CGCCAGCCGG
ATCAGGAGCT GCCTTGCGCC GGAGGACACC GTGGCTCGGC TCGGCGGCGA CGAGTTCGCG
GTGCTCCTGA CCATGGCGGC CGATCGCGAC GAAGTCATTG CCAAGGTCAC CGAGATTCTC
GAGCGGATTC GCGAGCCCTA TCGCTGCCTC GGCCATCAAT TGTCGACCGA CGCCAGCATC
GGCATCGCGC TCGCGCCGGA ACATGGCGTC GAGATCGATC AGCTGACAAA GCATGCGGAC
CTCGCGATGT ACGCTGCCAA GGCGGACGGC CGCCATACTT TCCGCTTCTT CGAGCCGGCG
ATGGATGAGA GCGCGCGGGA GCGGCTGCAG CTGCAGCAGG ATCTGCGCCG CGCCATCACC
GAGGGCCAGT TCGAGCTGCA TTATCAGCCC CTGCTCGGCT TCAGGGAGAA CATCATGACC
GGCTGCGAGG CGCTGCTGCG CTGGCGGCAT CCCGAGCGCG GCATGGTGCC GCCGCTCGAT
TTCATCCCGC TCGCCGAGGA CACCGGCCTC ATCAACGAGA TCGGCGACTG GGTGATGCGA
ACGGCCTGCG CCGAAGCGGC GCACTGGCCG AGCGACATCC GCGTCGCCGT CAATGTCTCG
CCGATCCAGT TGAAATCCCC GACGCTGGCG CTGCATGTCG CGAGCGCATT GTCAGCCGCC
GGCCTTGCAC CAGAACGGCT CGAGATCGAG ATCACAGAAG CGGTTCTGAT CGGCGACGAT
GACGTGGCGC TCGACATCCT GCATCAGCTG CACGCCATGG GCGTGCGCAT CGCGCTGGAT
GATTTCGGCA CCGGCTATTC GTCGCTCAGC TACCTCAAGC GCTTTCCGTT CGACAAGATC
AAGATCGACC GTTGCTTTGT CAGCGATATC GGCGCCGACA GTTCATCGGC GATCGTGCAG
GCGGTGGTCA GCATTGCCGC GGCCAGCAAC ATGACGACCA CGGCCGAAGG CGTCGAGACG
GGTGCACAGC AGACGGCGCT GCGCCAGCTC GGCTGCACCG AGATGCAGGG CTATCTGTTC
AGCGCGCCCA AGCCGGCCGC GGAACTGCGC AAGCTGTTCG CGCCGGGCCC GATTGTCCCG
GACGATCTGC AGGCCGCCGG CTGA
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| Protein sequence | MRSLISSRVD PGMQRAADTS GAVETEPTRL GTSIWRGPVP WLAACGALLI AAIVIGTLVM
ANGFKDRTIG NNERELENTV LLLSRHFAQQ FEDADTAVSH AVHRMQLGSI DSPEAFRSRM
ARPEIREMLQ SQINGLSYMG DLTIIGADGS FINWSENREV PAINVADREY FKTLADSQQS
DAVIIAPVVS YVTGKWATIV AHRLSGANGE FLGLLSRRVD PKTYEKFLES MSLGNGASIT
LFHADGTVLA RYPHSEAVIG RRVGGNGGLL SSVADGAVHT ALVTSPFDDL DKIAAGARVS
RFPLTITATR TIDDALADWR SQVVLLVGAA TLAAGVIAVM FSLMIRQILR QNRIARQQLE
GEKQRVETAL DNMTQGLISF DADACVVMFN RRFIDMLGLS TDVIRPGVHL TEVIAHCKAQ
GSFNGDVADF CTAIHDRAAA GGTSQMVIEA GAGRFLNVID KPLATGGWVT TLEDISEHRK
LEQERDRNYA FLREIIDHIP SPIMVKDVQD RRYVLVNKSS ERCFGRPCEQ IVGKTLFDLM
PRPIAEKAAA DDDRALEHAD GLVLEEHPWQ TPGLGLRYIT SRRIVVTDDR QRPRYLINVI
EDTTERRLAD ERIAHLAHYD ALTELPNRVL FRERIAHEIE RARHGMFFAL LYLDIDEFKG
INDSLGHHVG DELLRTIASR IRSCLAPEDT VARLGGDEFA VLLTMAADRD EVIAKVTEIL
ERIREPYRCL GHQLSTDASI GIALAPEHGV EIDQLTKHAD LAMYAAKADG RHTFRFFEPA
MDESARERLQ LQQDLRRAIT EGQFELHYQP LLGFRENIMT GCEALLRWRH PERGMVPPLD
FIPLAEDTGL INEIGDWVMR TACAEAAHWP SDIRVAVNVS PIQLKSPTLA LHVASALSAA
GLAPERLEIE ITEAVLIGDD DVALDILHQL HAMGVRIALD DFGTGYSSLS YLKRFPFDKI
KIDRCFVSDI GADSSSAIVQ AVVSIAAASN MTTTAEGVET GAQQTALRQL GCTEMQGYLF
SAPKPAAELR KLFAPGPIVP DDLQAAG
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