| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_7588 |
|---|
| Symbol | secA |
|---|
| ID | 5155082 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | - |
|---|
| Start bp | 7978208 |
|---|
| End bp | 7981060 |
|---|
| Gene Length | 2853 bp |
|---|
| Protein Length | 950 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640562233 |
|---|
| Product | preprotein translocase subunit SecA |
|---|
| Protein accession | YP_001243341 |
|---|
| Protein GI | 148258756 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0653] Preprotein translocase subunit SecA (ATPase, RNA helicase) |
|---|
| TIGRFAM ID | [TIGR00963] preprotein translocase, SecA subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.334261 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGGCG CGCTCGCCCG TAAGCTTTTC GGCTCCGCCA ATGACCGTCG CGTCAAGGGT
TACCAGGCCC GTGTCAACGC CATCAACGCG CTGGAGCCGG AGCTCGCCAA GCTGACCGAC
GAGCAGCTGA AGGCGCGCAC CGCGGAGTTC AAGGCGCAGC TCGCCGAGGG CAAGACGCTC
GACGACATCC TGGTCCCGGC CTTCGCCACC GTCCGCGAGG CCTCCAAGCG CACCCTCGGC
CAGCGCCATT TCGACGTCCA GCTGATCGGC GGCATGGTGC TGCACGAGGG CGACATCGCC
GAGATGAAGA CCGGTGAAGG CAAGACGCTG GTGGCCACCC TCGCCGTCTA CCTCAACGCG
CTGGCCGGCA AGGGCGTCCA CGTCGTGACG GTGAATGATT ACCTCGCCCG CCGCGACGCC
GGCTGGATGA GCCAGATCTA CGGCTTCCTC GGCCTGACCA CCGGCGTGAT CGTCCACGGC
CTCGACGATG CCGAGCGCAA GTTGGCCTAT GCCTGCGACA TCACCTACGG CACCAACAAC
GAATACGGCT TCGACTATCT GCGCGACAAC ATGAAGTACC GGCTGGAGGA CATGGTCCAG
CGCGGGCACT ATTTCGCCAT CGTCGACGAG GTCGACTCCA TCCTGATCGA CGAGGCGCGC
ACGCCGCTGA TCATCTCCGG TCCGCTCGAC GACCGCTCTG ACTTCTACAA CACCATCGAC
ACCTTCGTGC CGAAGCTCGA CAAGTCCGAC TACGATGTCG ACGAGAAGCA GCGCACGGTG
ACCTTGACCG AAGCCGGCAT GGAGAAGATC GAGACCCTGC TGCGCGACGC CGGTCAGCTC
AAGGGCGAGT CGCTCTACGA CGTCGAGAAC GTCTCCGTCG TCCACCACAT CAACCAGGCG
CTGCGCGCCC ACACGCTGTT CACCCGCGAC AAGGACTATA TCGTCCGCGA CGGTGAGGTC
GTGATCATCG ATGAGTTCAC TGGCCGCATG ATGCCGGGCC GGCGCTATTC GGAGGGCCTC
CACCAGGCGC TCGAGGCCAA GGAGCACGTC CAGGTCCAGC CGGAGAACCA GACGCTGGCC
TCGATCACCT TCCAGAACTA TTTCCGCATG TACGAGAAGC TCGCCGGCAT GACCGGCACG
GCCGCCACCG AGGCGGACGA GCTGTTCGAC ATCTACAAGC TCGAGGTCGT GGAGATCCCG
ACCAACCTGC CGGTCGCGCG CCTCGACGAG GACGACGAGG TCTACCGCAC CCAGCAGGAG
AAATACGCCG CCATCCTGGC CGAGATCGAG CGTGCGAATT CCCGCCTGCA GCCGGTGCTG
GTCGGCACCG CATCGATCGA GAAGTCGGAA GTGCTGGCCG CCTATCTCAA GCAGCACGGC
TACAAGCAGA TCGATTTCGG CAGCGAACGT GCGCTCGACA AGCTCTATGC GGCGGCCCGC
GCCGGCAAGC CGGCGAAGCT GTTTGCGGTG CTGAATGCGC GCTTCCACGA GCAGGAGGCC
TATATCGTGG CCGAAGCCGG CGTGCCCGGC GCGATCACGA TCGCGACCAA CATGGCGGGA
CGCGGCACCG ACATCAAGCT CGGCGGCTCC TTGGAGATGC GCATCCAGCA GGAGACGGCC
GGGATCACCG ACGAGACGGA GAAGGCCGCC AAGATCGAGC AGATCAAGGC CGACATCGCA
CGCTTCCGCG AGATCGTGCT GAAGGCCGAG GAGACGGTCG AGATCGAGCC GGCCAAGGGC
TCCAAGCCGG CCAAGACGGT GGTCAAGCCG GGCGGCCTCT ACATCATCGG CTCCGAGCGC
CACGAATCCC GCCGCATCGA CAACCAGCTG CGCGGCCGTT CCGGCCGCCA GGGCGATCCC
GGCCGCTCGA AGTTCTTCCT GTCCCTGGAA GACGATCTGA TGCGGATCTT CGGCTCCGAC
CGGCTCGACA GCATGCTGAC CCGGCTCGGC CTGAAGGAAG GCGAGGCCAT CATCCATCCG
TGGATCAACA AGGCGCTGGA GAAGGCTCAG CAGAAGGTCG AGGCGCGCAA CTTCGACATC
CGCAAGAACC TCCTGAAGTT CGACAACGTC CAGAACGACC AGCGCAAGGT GATCTTCGAC
CAGCGCGTCG AGCTGATGCA GGACGAGAGC GTCGCCGAGA CCATCGCCGA CATGCGCCAC
GCCTTCATCG ACGACCTCGT CAGCAAGCAC GTGCCCGAGC ATGCCTATGC CGAGCAGTGG
GACGTGGCCG GGCTGAAGGA GGAGCTGAAG CGCGTGCTCG ACATCGAGCT GCCGGTCGAC
GAATGGGCCA AGGAAGAAGG CATCGCCGAC GAGGAGCTGC TCAAGCGCAT CGAGACCCAT
GCCGACGAGC GCATGGCCGC CAAGGTCGGG CAGTGGGGCC CGGACGTGAT GCGCTACGTC
GAAAAGACGA TCCTGCTGCA GACGCTCGAT CATCTCTGGC GCGAGCATCT GGTCATGCTC
GACCATCTGC GCCAGGTGAT CGGCCTGCGC GGCTATGGCC AGCGCGACCC GCTGCAGGAG
TACAAGTCGG AAGCCTTCAC GCTGTTCGAG GCGATGATCG CGCATTTGCG CGAGGCGGTC
ACTGCGCAAC TGATGCGGGT CGAGATCGTG CCGCCCGAGG AGCAGCAGCC GGTGCTGCCG
CCGATGCAGG CGCATCACGC CAACCCGACC ACCGGCGAGG ACGAGATGGC CTTTGCCAAC
GTCTCCCTGG TGCCGTCCTC CGGCGCCGCC CCGGTCCCCG CCGAAGCGCG CAATCCGAAC
GACCCCTCGA CCTGGGGCAA GGTCGGCCGC AACGAGGACT GCCCCTGCGG CTCCGGCAAG
AAGTACAAGC ACTGCCACGG CCGCTACGCG TAA
|
|---|
| Protein sequence | MIGALARKLF GSANDRRVKG YQARVNAINA LEPELAKLTD EQLKARTAEF KAQLAEGKTL
DDILVPAFAT VREASKRTLG QRHFDVQLIG GMVLHEGDIA EMKTGEGKTL VATLAVYLNA
LAGKGVHVVT VNDYLARRDA GWMSQIYGFL GLTTGVIVHG LDDAERKLAY ACDITYGTNN
EYGFDYLRDN MKYRLEDMVQ RGHYFAIVDE VDSILIDEAR TPLIISGPLD DRSDFYNTID
TFVPKLDKSD YDVDEKQRTV TLTEAGMEKI ETLLRDAGQL KGESLYDVEN VSVVHHINQA
LRAHTLFTRD KDYIVRDGEV VIIDEFTGRM MPGRRYSEGL HQALEAKEHV QVQPENQTLA
SITFQNYFRM YEKLAGMTGT AATEADELFD IYKLEVVEIP TNLPVARLDE DDEVYRTQQE
KYAAILAEIE RANSRLQPVL VGTASIEKSE VLAAYLKQHG YKQIDFGSER ALDKLYAAAR
AGKPAKLFAV LNARFHEQEA YIVAEAGVPG AITIATNMAG RGTDIKLGGS LEMRIQQETA
GITDETEKAA KIEQIKADIA RFREIVLKAE ETVEIEPAKG SKPAKTVVKP GGLYIIGSER
HESRRIDNQL RGRSGRQGDP GRSKFFLSLE DDLMRIFGSD RLDSMLTRLG LKEGEAIIHP
WINKALEKAQ QKVEARNFDI RKNLLKFDNV QNDQRKVIFD QRVELMQDES VAETIADMRH
AFIDDLVSKH VPEHAYAEQW DVAGLKEELK RVLDIELPVD EWAKEEGIAD EELLKRIETH
ADERMAAKVG QWGPDVMRYV EKTILLQTLD HLWREHLVML DHLRQVIGLR GYGQRDPLQE
YKSEAFTLFE AMIAHLREAV TAQLMRVEIV PPEEQQPVLP PMQAHHANPT TGEDEMAFAN
VSLVPSSGAA PVPAEARNPN DPSTWGKVGR NEDCPCGSGK KYKHCHGRYA
|
|---|
| |