| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_7486 |
|---|
| Symbol | |
|---|
| ID | 5152910 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 7857124 |
|---|
| End bp | 7859112 |
|---|
| Gene Length | 1989 bp |
|---|
| Protein Length | 662 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640562135 |
|---|
| Product | OmpA domain-containing protein |
|---|
| Protein accession | YP_001243244 |
|---|
| Protein GI | 148258659 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3637] Opacity protein and related surface antigens |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.661615 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.200783 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTCGCT CGAACCGCAC CTGGGACATG GTCCTGGCCG GCACCATTGC CGCGCTTGGT
CCGTTGGCAG CGCCGGCTGC CGCCGCCGAT CTCCCGGTCA AGGCGCGGAT GGCGCAGACC
GTGTTCGACT GGAGCGGGAT CTATGTCGGC GCGCACGCCG GCTACACGCG TGACCATGCC
CAGGCCTCCC TGATTGATCC GATCGGCGGA GCAGGCGCGG GCAGCCGGTT CAGCGGCCTC
ACCGGCGGCG TGCAGGCCGG CTACAACTGG GTGACCCGCT CCGGCCTGCT GCTCGGATTC
GAAGGCGACT TCAGCTTCCC GAACTCGCTG ACCTCCAACC ACACCGTCGC AATGCTGAAC
AGGCCGGGAT CGAGCGTGTC CGAGCTGTGG GATTATGTCG CATCGGCACG CGGCCGGATC
GGCTACGCCC AGGGCGACTG GCTGGTCTAT GCCACCGGCG GCCTTGCATG GACCGGGGGC
CGCTTCATCA ACACGACGGC GGCGGGCGAC GAGAAGCTGC TGACGACGCG GGTCGGCTGG
ACGGCCGGCG CCGGCATCGA GCGCGCCTTC GCGCCGCATT GGAGCTGGCG GCTGGAATAT
CTCTACAGCC AGTTCGAGAA CGGCGGCGTG CGCTTCTCCA ACGGCGCCAG CTACACTTCC
ACGCTCGAAT TTCAGACCTT GCGCGTCGGG CTCAACCGCA AGCTCGATTT TGCAGACGGC
CCGGATCTCA AGCTCAAGAG CGATCCGTCC GATCCAGAGT CGGATCGCTG GGAGATCCAT
GGCCAGGCCA CCGTCATCGG CCAGGGATAT CCGTCGTTTC GTGCTCCCTA CACCGGCACC
AACAGCCTGA CCCCGGCACG ACAGTTCCAG GAAACCTGGA GCAACAGCCT GTTCATCAAT
GCGCGGCTGT GGGACGGCGG CGAGGTCTAT TACAATCCCG AACTGCTGCA GGGCTTCGGC
CTCAGCAACA CGGTCGGGCT CGGCGGCTTC GCCAATGGCG AGGCGCAGAA GTCTGACTTT
CCCTATCCGC ACTACAACAC CTCGCGGCTT TTCCTGCGCC AGACCTTCGG CTTCGGCGGC
GAGCAGGAGC AGCTCGGCTC CGGCCAGTTG CAGCTCTCCG GCAAGCAGGA CGTGTCGCGG
CTCACCTTGC AGATCGGCAA ATTCCCCGTG CTCGACGTGT TCGACGGCAA CGCCTACGCC
AAGGACGCGC GCAAGGACTT CATGAACTGG TCGATCTGGG CGCCCGGCGC GTTCGACTAT
GCGGCCGACA AGCTCGGCCT GACCTATGGC GCGACCGCCG AGCTGAACCA GAAGAGCTGG
GCGCTGCGCT CCGGCTACTT CCTGATGGAC GCGGTCTCGA ACTCGAACAA TTTCGACATG
AACGTCTTCC GCCGCGGCAG CTACGTCGTC GAGCTGGAGA TGCGCTATCA GTTGTTCTCG
CAGCCAGGGC ATCTGCGCAC CATCGGCTGG TTCAACAGCG TGTTCTCCGG CAGCTATCGC
GAAACGCTCG ACAATCCCGC GCTCAATGCC GACATCAGCC AGACCCGCCG CGGCCGCAGC
AAATATGGCT ATGTCGTCAG CTTCGACCAG GCGCTATCGG ACGAGTTCGG CCTGTTCGGC
CGCTGGAGCT GGAACGACGG CAAGACCGAG ATCATGGCCT TCACCGACAT CGACAACAGC
CTGTCGCTCG GCGCCTCGAT CAAGGGCAAC CGCTGGGGCC GCCCCGACGA CACGATCGGC
CTCGCCGGTG TGACCAACGG CCTGTCGCGC GACCACCGCG CCTTCCTTGC CGCAGGCGGC
CTGGGCCCGC TGATCGGCGA CGGCGCATTG AACTATCGCC GCGAGAGCAT CATCGAGGCC
TACTACGCTT ACTCGATCAA CAAGTACCTG ACCTTCACGG CCGACTATCA GTTCGTCAAC
AACCCCGCCT ACAACGCCGA CCGCGGCCCG GTCTCGATCT TCTCGGGACG GCTGCACGGG
GATTTCTGA
|
|---|
| Protein sequence | MIRSNRTWDM VLAGTIAALG PLAAPAAAAD LPVKARMAQT VFDWSGIYVG AHAGYTRDHA
QASLIDPIGG AGAGSRFSGL TGGVQAGYNW VTRSGLLLGF EGDFSFPNSL TSNHTVAMLN
RPGSSVSELW DYVASARGRI GYAQGDWLVY ATGGLAWTGG RFINTTAAGD EKLLTTRVGW
TAGAGIERAF APHWSWRLEY LYSQFENGGV RFSNGASYTS TLEFQTLRVG LNRKLDFADG
PDLKLKSDPS DPESDRWEIH GQATVIGQGY PSFRAPYTGT NSLTPARQFQ ETWSNSLFIN
ARLWDGGEVY YNPELLQGFG LSNTVGLGGF ANGEAQKSDF PYPHYNTSRL FLRQTFGFGG
EQEQLGSGQL QLSGKQDVSR LTLQIGKFPV LDVFDGNAYA KDARKDFMNW SIWAPGAFDY
AADKLGLTYG ATAELNQKSW ALRSGYFLMD AVSNSNNFDM NVFRRGSYVV ELEMRYQLFS
QPGHLRTIGW FNSVFSGSYR ETLDNPALNA DISQTRRGRS KYGYVVSFDQ ALSDEFGLFG
RWSWNDGKTE IMAFTDIDNS LSLGASIKGN RWGRPDDTIG LAGVTNGLSR DHRAFLAAGG
LGPLIGDGAL NYRRESIIEA YYAYSINKYL TFTADYQFVN NPAYNADRGP VSIFSGRLHG
DF
|
|---|
| |