Gene BBta_7376 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBBta_7376 
Symbol 
ID5150587 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBradyrhizobium sp. BTAi1 
KingdomBacteria 
Replicon accessionNC_009485 
Strand
Start bp7749823 
End bp7752033 
Gene Length2211 bp 
Protein Length736 aa 
Translation table11 
GC content66% 
IMG OID640562036 
Productdiguanylate cyclase/phosphodiesterase 
Protein accessionYP_001243145 
Protein GI148258560 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones43 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGGCCCG TTCGGCCAAT TAAGCCCAAG AAGCTCAATC GCGTGCCCCG TGCTCGTGAT 
GCAATCCGCC CGGTCAAGCC AACCCCGAAG CTGGCACAGC ACAACCTGGG GACGACTGCC
GTCATCGATG AGGTCGCCGG CAGACGTGCC GAGGCGGAAG CCGCGATCGC CGAGGCGGAG
AAGGCTCACG ACCGGCTGAT CGAGGCGATC GACATTCTCC CCGAAGGGAT CGTGTTCCTC
GATTCCGAGG GCCGCTACAT CCTCTGGAAC AAGAAATACG CCGAGATCTA CAATCGCAGC
TCGGATCTCT TCAAACCCGG TGCCCGGCTG CAGGACACGA TCCGGATCGG CGTGGCGCGT
GGCGACTATC CGGAAGCCGT CGGGCGCGAG GATGAATGGG TCGCGGAGCG TCTCGAGAAG
CTGTTTCGAC CGAAGGGCCG CCACGAGCAG AAGCTGGCGG ATGGCCGCAC GATCCTGATC
GATGAGCGGC TCACCAGTGA CGGCGGGATC GTCGGTCTGC GGGTCGACAT CACCGAGCTG
AAGCAGCGGG AGGAATCATT CCGGCTGCTG TTCGACGGCA ATCCGGTGCC GATGATCGTA
TGCGCCAGGA GTGACGGCCG TGTGCTCGGC GTCAACGAGG CGGCCGCCCA GCATTACGGC
TACAGCCGGG CGGCATTCGA GCAGCTCAAC ATCCGCAATC TGCAGGCCTA TGAGAGCGAA
CCGCCCTGGG CGGCGGAGCA TTCCGGTGAG GAGCAGGCGG CCCGGACCTG GAAGCATGTT
CGTGCCGACG GCGCCCTGAT CGACCTCGCG ATCTACTCGC GCCATCTGGT TCACAACGAA
CAGCCTGCCG TGCTGCTGGC GCTGATGGAC ATCACCGAGC GCAAGCGCGC CGAGGCGCGG
CTGGCCTTCC TGGCGCAGCA TGATGCGCTG ACGGGCCTTC CGAGCCGAAA CCTGCTGCGT
CAGAAGATCG AGGACAAGCT TGGGCAGATG CGGCGCGGTT CCGAGAAGAT GGCGGTGCTG
GTGCTCGGGC TCGATAATTT CAAATCGATC AATGACACGC TGGGGCATGC CGCCGGCGAC
CGGTTGCTGC GTGGGGTCGG CAAGCGGCTG CGCTCCATCC TGCGCCAGGA GGACGTTGTC
GCGCGCTTGA ATTCGGACGA GTTCGCCATC GTCCATGGCG GGCTGGCCCG GCCGGAGGAT
GCGGCCCAGC TTTGCCGGCG GCTGCTGCAG GCGATCGCCG ATCCCTATCT GATCGACGGC
AGCTCCGTGA CCATCGGGGC GACCGTTGGC ATCGCGATGG CGCCGAATGA CGGTGACGAT
GCCGAGAAGC TGCTGAAGAA CGCCGACATG GCGCTGTCGC GGGCCAAGAC CGAGACGCGC
GGCAGCTTCA GCTATTTCGA GACCGGAATG GATGCACGCG CGCAAAGCCG GCGCAAGATT
GAGATCGAGC TGCGGGACGC CATCCAGCGC GATGTGTTGC AGCCTTATTA TCAGCCGCTG
ATCGACCTCT CGACCGGACG CATCACCGGC TTCGAGGCAT TGGTGCGTTG GCCGCATCCG
GAGCGCGGCA TGATCCCGCC ATCCGAATTC ATCCCGGTCG CCGAGGACAC CGGCCTGATC
TCCGCGCTCG GTCGCGTCAT GCTGCGCCGG GCCTGCAATG ATGCCGCGAA CTGGCCGGAC
GAGGTTCGGG TCGCGGTCAA CATGTCGCCG CTGCAGTTCC GCGTCGGCAA CGTGCTGTCG
TTGGTCATGG ACGTGCTGAA GCAGTCGGGC CTGCCGCCGA GCCGCCTCGA GCTCGAGATC
ACCGAGACGC TGGTGCTCGA GAAGAGCGGC CAGGTGCTGG CGACGCTGCA TGCGCTACGC
GCGCTCGGCG TGCGCATCTC GATGGACGAT TTCGGCACCG GCTATTCCAG CCTGAGCTAT
CTGCGCAGCT TCCCCTTCGA CAAGATCAAG GTCGATCAGT CGTTCATCCG CGATCTCGCC
GCCAACCGCG AGGCCCAGGC GATCGTCCGC TCCATCGTCA GCCTCGGCAA GGGGCTCGGC
GTGACCATCA CGGCGGAGGG CGTCGAGACC GAAGCGGAAC TGCGCTGTCT GCGCGCCGAA
GGCTGCCATG AGGGGCAGGG CTATTTGTTC AGCCGTCCCC GGCCCAACGC CGAGATCGTC
GGCCTGCTCG AGGCGCAATC GGCGGCCGAT CGCCGGGTGA TGGTGGCCTG A
 
Protein sequence
MRPVRPIKPK KLNRVPRARD AIRPVKPTPK LAQHNLGTTA VIDEVAGRRA EAEAAIAEAE 
KAHDRLIEAI DILPEGIVFL DSEGRYILWN KKYAEIYNRS SDLFKPGARL QDTIRIGVAR
GDYPEAVGRE DEWVAERLEK LFRPKGRHEQ KLADGRTILI DERLTSDGGI VGLRVDITEL
KQREESFRLL FDGNPVPMIV CARSDGRVLG VNEAAAQHYG YSRAAFEQLN IRNLQAYESE
PPWAAEHSGE EQAARTWKHV RADGALIDLA IYSRHLVHNE QPAVLLALMD ITERKRAEAR
LAFLAQHDAL TGLPSRNLLR QKIEDKLGQM RRGSEKMAVL VLGLDNFKSI NDTLGHAAGD
RLLRGVGKRL RSILRQEDVV ARLNSDEFAI VHGGLARPED AAQLCRRLLQ AIADPYLIDG
SSVTIGATVG IAMAPNDGDD AEKLLKNADM ALSRAKTETR GSFSYFETGM DARAQSRRKI
EIELRDAIQR DVLQPYYQPL IDLSTGRITG FEALVRWPHP ERGMIPPSEF IPVAEDTGLI
SALGRVMLRR ACNDAANWPD EVRVAVNMSP LQFRVGNVLS LVMDVLKQSG LPPSRLELEI
TETLVLEKSG QVLATLHALR ALGVRISMDD FGTGYSSLSY LRSFPFDKIK VDQSFIRDLA
ANREAQAIVR SIVSLGKGLG VTITAEGVET EAELRCLRAE GCHEGQGYLF SRPRPNAEIV
GLLEAQSAAD RRVMVA