| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_7357 |
|---|
| Symbol | polA |
|---|
| ID | 5149500 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 7723733 |
|---|
| End bp | 7726795 |
|---|
| Gene Length | 3063 bp |
|---|
| Protein Length | 1020 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640562018 |
|---|
| Product | DNA polymerase I |
|---|
| Protein accession | YP_001243127 |
|---|
| Protein GI | 148258542 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0258] 5'-3' exonuclease (including N-terminal domain of PolI)
[COG0749] DNA polymerase I - 3'-5' exonuclease and polymerase domains |
|---|
| TIGRFAM ID | [TIGR00593] DNA polymerase I |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.409782 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGAAA ATCCCTACAT TGCGCACATG CCCAAAGCGC CCCAGAAAAC TGCCGCCACC
AGCCCCGCCG CCCCTGTGCC TGCTGCCGCC ACCCAAGGCG CGGCCAAGGG AGCCACCAAG
AGCGACCACG TGTTCCTGGT CGATGGCTCG TCCTACATCT TCCGTGCCTA TCACGCGCTG
CCGCCGCTCA ACCGCAAGTC CGACGGGCTG AACGTCAATG CCGTGCTTGG CTTCTGCAAC
ATGTTGTGGA AGCTGCTCCG CGACATGCCC GAGACCGACC GGCCGACGCA TCTGGCCATC
GTGTTCGACA AGTCGGAAGT GACCTTCCGC AACAAGATCT ACGCCGATTA CAAGGCCCAC
CGGCCGCCGG CGCCGGACGA CCTGATCCCG CAATTCGCGC TGATCCGCGA GGCGGTGCAC
GCCTTCGATC TGCCCTGCCT GGAACAGGCA GGCTACGAGG CCGACGACCT GATCGCGACC
TATGCGCGGC TCGCCTGCGA GCGCGGGGCC ACCACCACCA TCGTGTCGTC CGACAAGGAC
CTGATGCAGC TCGTCAACGA CTGCGTCACG ATGTACGACA CGATGAAGGA CCGCCGCATC
GGCACAGCCG AGGTGATCGA GAAATTCGGC GTGCCGCCGG AGAAGGTTGT CGAGGTGCAG
GCGCTGGCGG GCGATTCCAC CGACAACGTG CCGGGCGTAC CCGGCATCGG CATCAAGACC
GCGGCGCAGT TGATCAATGA TTACGGCGAT CTCGAAGGGC TGCTGACGCG CGCCGCCGAG
ATCAAGCAGC CGAAACGCCG CGAGGCGCTG ATCGAGAACG CCGAGAAGGC GCGGATCTCG
CGCCAGCTGG TGCTGCTCGA TGATCATGTC GCGCTGGAGG TGCCGCTCGA CGACCTCGCG
GTGCACGAGC CCGATCCGCG CAAGCTGATC GCCTTCCTCA AGGCGATGGA GTTCACCACG
CTGACGCGGA GGGTGGCCGA ATATTCGCAG ATCGATCCGG CCGACGTCGC GGCGAATCAG
CAGCTCAAGA GCGGCGGCGG CACAGCCGTA CCCGCGCCCG CTGCTGCCAG CGCAGGGACG
AACGCAGCGG GCAAGCCGGC GGCCGCTGCT CCCAAAACGG GGGATCCGCG CACCGACAAA
TCGGCGATGA GCAAGGGCAC ACCGGTGAGC CTCGCCGAGG CGCGCGCGGA AGCAGCGAAG
AGCGCGCGCA TCGATCGCGA AAAGTATCAG ACGATCCGCA GCCTGCCCGA GCTGAACGCC
TGGATCGCGC GCATCCATGA TCTCGGCCGC GTCACTATCG AGGCCAAGGC GAATTCGATC
GATCCGATGC AGGCGAGCCT TTGCGGCATC GCGCTGGCGC TGGCGCCCAA CGATGCCTGC
TATATTCCGT TGGCGCATCG CCAGGCCGGC GACGGCGGCG GCCTGTTTGA TGCTGGCCTC
GCGCCGGACC AGGTCAAGGA CCGCGACGCG CTGGCTGCGC TGAAGCCGGT GCTGGAATCG
GCCGGCATTC TCAAGATCGG CTTCAACATC AAATTCGTCG CCGTGCTGCT GGCGCAACAC
GGCATCACGC TCGCAAACGT CGATGACATC CAGCTGATGA GCTACGCGCT CGACGCGGGG
CGGGGTTCGC AGAAATTCGA GTCGCTGGCA GAGCACGTGC TCGCGCACGC CGTCCTCGGG
GAAGGCGAGT TGGTCGGCAG CGGCAAGAAC AAGCTGACCT TCGAGCAGGT CGCCATCGAT
CGCGCGACAG CGCATGCGGC CGAGGCGGCC GACGTCATCC ATCGGCTGTG GCGGGTGCTG
AAGCCGCGGC TGGTCGCCGA GCGCATGACC GCGGTCTACG AGACGCTGGA GCGGCCGCTG
GTGACCGTGC TGGCGCAGAT GGAGCGCAGG GGCATCGCGA TCGACCGCCA GGTGCTGTCG
CGGCTGTCCG GCGATTTTGC CCAGACCGCG GGACGCGTCG AGGCCGAACT GCAGGAGCTG
GCCGGCGAGC CGATCAATGT CGGCAGTCCC AAGCAGATCG GCGACATCCT GTTCGGCAAG
ATGGGCCTGC CGGGCGGCAC CAAGACCAAG ACCGGCGCGT GGTCGACCTC CGCCTCGATT
CTCGATGACC TCGCCGAGCA GGGCAATGAT TTCGCGCGCA AAATCCTGGA ATGGCGCCAG
GTCTCGAAGC TGAAATCGAC CTACACCGAT GCGCTGCCGA CCTATGTCAA TCCGCAGAGC
CAGCGCGTGC ACACCACCTA CGCGCTCGCG GCGACCACGA CGGGACGGTT GTCGTCGAAC
GAACCGAATC TGCAGAACAT TCCGGTGCGG ACCGAGGATG GCCGCAAGAT CCGCCGCGCC
TTCATCGCCA CGCCAGGCCA CAAACTGGTG TCGGCGGATT ACTCGCAGAT CGAGCTGCGG
CTGCTGGCGG AGATCGCCGA TATTCCGGTG CTGAAACAGG CCTTCAAGGA CGGGCTCGAC
ATTCACGCAA TGACGGCGTC GGAGATGTTC GGCGTGCCGA TCAAGGACAT GCCGAGCGAG
GTGCGCCGCC GGGCGAAGGC GATCAATTTC GGCATCATCT ACGGCATCTC CGCCTTCGGC
CTTGCCAACC AGCTCGGCAT CGCCCGCGAA GAGGCGTCGG CCTATATCAA GCGCTATTTC
GAGCGCTTCC CCGGCATCCG TGCCTATATG GACGAAACGC GCGAATTCTG TCGCAAGCAC
GGCTATGTCA CCACGCTGTT CGGCCGCAAG TGCCACTATC CCGAGATCAA GGCGTCGAAC
GCCTCGGTGC GCGCCTTCAA CGAACGCGCC GCGATCAACG CGCGGCTGCA GGGCACCGCC
GCCGACATCA TCCGCCGCGC CATGACACGC GTCGAGGATG CGCTCGCGGA GAAGAAACTC
TCCGCGCAGA TGCTGCTGCA AGTGCATGAC GAATTGATCT TCGAGGTGCC GGACGACGAA
GTCGCTGCGA CCCTGCCGGT GGTGCAGCAC GTCATGCAGG ACGCCCCCTT CCCGGCCGTG
CTGCTATCGG TGCCGCTGCA CGTCGACGCG CGGGCCGCTG ACAATTGGGA CGAGGCGCAT
TGA
|
|---|
| Protein sequence | MSENPYIAHM PKAPQKTAAT SPAAPVPAAA TQGAAKGATK SDHVFLVDGS SYIFRAYHAL
PPLNRKSDGL NVNAVLGFCN MLWKLLRDMP ETDRPTHLAI VFDKSEVTFR NKIYADYKAH
RPPAPDDLIP QFALIREAVH AFDLPCLEQA GYEADDLIAT YARLACERGA TTTIVSSDKD
LMQLVNDCVT MYDTMKDRRI GTAEVIEKFG VPPEKVVEVQ ALAGDSTDNV PGVPGIGIKT
AAQLINDYGD LEGLLTRAAE IKQPKRREAL IENAEKARIS RQLVLLDDHV ALEVPLDDLA
VHEPDPRKLI AFLKAMEFTT LTRRVAEYSQ IDPADVAANQ QLKSGGGTAV PAPAAASAGT
NAAGKPAAAA PKTGDPRTDK SAMSKGTPVS LAEARAEAAK SARIDREKYQ TIRSLPELNA
WIARIHDLGR VTIEAKANSI DPMQASLCGI ALALAPNDAC YIPLAHRQAG DGGGLFDAGL
APDQVKDRDA LAALKPVLES AGILKIGFNI KFVAVLLAQH GITLANVDDI QLMSYALDAG
RGSQKFESLA EHVLAHAVLG EGELVGSGKN KLTFEQVAID RATAHAAEAA DVIHRLWRVL
KPRLVAERMT AVYETLERPL VTVLAQMERR GIAIDRQVLS RLSGDFAQTA GRVEAELQEL
AGEPINVGSP KQIGDILFGK MGLPGGTKTK TGAWSTSASI LDDLAEQGND FARKILEWRQ
VSKLKSTYTD ALPTYVNPQS QRVHTTYALA ATTTGRLSSN EPNLQNIPVR TEDGRKIRRA
FIATPGHKLV SADYSQIELR LLAEIADIPV LKQAFKDGLD IHAMTASEMF GVPIKDMPSE
VRRRAKAINF GIIYGISAFG LANQLGIARE EASAYIKRYF ERFPGIRAYM DETREFCRKH
GYVTTLFGRK CHYPEIKASN ASVRAFNERA AINARLQGTA ADIIRRAMTR VEDALAEKKL
SAQMLLQVHD ELIFEVPDDE VAATLPVVQH VMQDAPFPAV LLSVPLHVDA RAADNWDEAH
|
|---|
| |