| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_7124 |
|---|
| Symbol | |
|---|
| ID | 5153984 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 7467282 |
|---|
| End bp | 7468820 |
|---|
| Gene Length | 1539 bp |
|---|
| Protein Length | 512 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640561801 |
|---|
| Product | long-chain-fatty-acid--CoA ligase |
|---|
| Protein accession | YP_001242912 |
|---|
| Protein GI | 148258327 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.100628 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCACC CCTCCATTCA TGCCCAGAGC CATCCCGACA AGATCGCCTA TCAGATGGCG
GCGACCGGCA AGGCCATCAC CTATCGCGAG CTCGACGAGC TCTCCAACCA GGGTGCACAG
CTGTTCCGCG CTTTGGGGCT GAAAGCCGGC GATCACATCG CCTTCCTGAT GGAGAACCGG
CTCGCCTTCA TGGAGATCGC ATGGGCCGCG CAGCGCTCCG GCCTCTATTA CACCGCGATC
AGCCGCTATC TCACCAAGGA CGAGATCGCC TACATCATCA AGGATTGCGG CGCCAAGGTC
TTCATCACCT CGCCGAAATG CGCCGAGCAG GTCCGCGATC TCGTGACCGC GGCTGATGGC
CCGATGTTTT TCATGGTCGA CGAGCCCGAA CCCGGCTTCC GCTCCTGGGA CAAGGAGGCT
GGCGCGCAGC CCAAGACGCC GATTGCCGAC CAGGTCGCCG GCTATGACAT GCTGTATTCG
TCCGGTACGA CCGGGCGGCC CAAGGGCATC AAGAAGGACT TTGAAGGCAA TCCTATCGAG
GCGCCGAATC AGTTCCTGCG CGTGCTCTGC GCCGACATGT GCGGCATGAA TGCCGAGAGC
ATTTATTTGT CGCCGGCGCC GCTCTATCAC GCGGCGCCGC TGCGCTTCAA CATGATGGCG
ATCGTGCTTG GCGGCACCTC GATCATCATG GAGCATTTCG ACGCCGAGGA CTTCCTGCGA
CTGGTGGAGA AATACAAGGT CACGCAGTCG CAGCTGGTGC CGACCATGTT CGTGCGCATG
CTGAAGCTGC CCGACGATGT GCGCAGGCGT TACGACGTCT CGACCTTGAA GGGCGCGATC
CACGCCGCCG CGCCCTGCCC TGTCGACGTC AAGGCGAAGA TGATCGAGTG GTGGGGACCG
ATCCTGATCG AGTATTATGC CGGTTCCGAA GGCAACGGCG TCACCGTGTG CACCTCGAAG
CAGTGGCTGG AGCATCGCGG CAGCGTCGGC CGCGCCGTCG TCGGCAAGAT CAAGATTCTT
GGCGAGGACG ACAAGGAGCT GCCGACCGGC GAGATCGGCT CGGTCTATTT CGCCGACGCG
CCTGTATTCT CCTATCACAA CGATCCGGAG AAGACGAAGC GGGCCTACAA CGACAAGGGC
TGGTCGACGC TCGGCGATGT CGGCTATCTC GATGCCGACG GCTTCCTCTA TCTCACCGAC
CGCAAATCCT ACATGATCAT CTCCGGCGGC GTGAACATCT ACCCGCAGGA GACCGAGGAC
GTTCTCATCA CCCATCCCGA CGTCGCTGAT GTCGCCGTGT TCGGCGTGCC GAACGAGGAG
ATGGGAGAAG AGGTCAAGGC AGTGGTGCAG CCGCACGACA TGTCCCGTGC CGGCAAGGCG
TTGGAGGAGC AGTTGATCCT GTTCTGCCGC CAGCATCTGT CGCCGATCAA ATGCCCGCGC
TCGATCGACT TCGAGCCGGA GCTGCCGCGC ACCCCGACCG GCAAGCTGGT CAAACGCCAT
TTGCGCGAAC GCTATTGGCC GAAGAAGGGC GCGGCCTGA
|
|---|
| Protein sequence | MTHPSIHAQS HPDKIAYQMA ATGKAITYRE LDELSNQGAQ LFRALGLKAG DHIAFLMENR
LAFMEIAWAA QRSGLYYTAI SRYLTKDEIA YIIKDCGAKV FITSPKCAEQ VRDLVTAADG
PMFFMVDEPE PGFRSWDKEA GAQPKTPIAD QVAGYDMLYS SGTTGRPKGI KKDFEGNPIE
APNQFLRVLC ADMCGMNAES IYLSPAPLYH AAPLRFNMMA IVLGGTSIIM EHFDAEDFLR
LVEKYKVTQS QLVPTMFVRM LKLPDDVRRR YDVSTLKGAI HAAAPCPVDV KAKMIEWWGP
ILIEYYAGSE GNGVTVCTSK QWLEHRGSVG RAVVGKIKIL GEDDKELPTG EIGSVYFADA
PVFSYHNDPE KTKRAYNDKG WSTLGDVGYL DADGFLYLTD RKSYMIISGG VNIYPQETED
VLITHPDVAD VAVFGVPNEE MGEEVKAVVQ PHDMSRAGKA LEEQLILFCR QHLSPIKCPR
SIDFEPELPR TPTGKLVKRH LRERYWPKKG AA
|
|---|
| |