Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BBta_6880 |
Symbol | |
ID | 5151349 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Bradyrhizobium sp. BTAi1 |
Kingdom | Bacteria |
Replicon accession | NC_009485 |
Strand | - |
Start bp | 7206601 |
End bp | 7208934 |
Gene Length | 2334 bp |
Protein Length | 777 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640561562 |
Product | diguanylate cyclase/phosphodiesterase |
Protein accession | YP_001242673 |
Protein GI | 148258088 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.296113 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.00757929 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGCAGGTCA TCAAGCAGAG CGATGAAATC GACCAGCGAT TGCAGTCGTC AATCAATGCT GCCCTGGTCG ATTCGCTATT CCAGAATCCG CAGTCGCTGG GCGCGGGTGC GGCCCTCGTC GCGATGGCCG CTGCGCTCAC CGCGACCAAG ACAGGGCTGA CATCGCTCTG GTGCTGCGTC GGGCTGCTCG TCCTCAGCGG CGGATGGCGC ACGTTCGACA TGTACTGCTA CCGCGTCGGC CGGCTTCATT CAACGCCCGC TTTGGCGCAG AAGTGGGAGA TGCGCTATCA GTTCGGCGCC ATTCTCTACG CGGCTGCGCT CGGCCTGTGG TGCGCCGTCG GCCTGCTGGC GACGACCGAT ACTGTCGTCC ACATGATCTC GATCGTGGTC ACCGTCGGCT ACATCGCGGG CGGTGTCGGC CGGACCTTCG GAAGGCCCTG GATCTACCAT CTCCAGATCG CATTGTCCTT CGGCATCACG TCGATCGCAC TGATCCTCCA CGGCACGATC TACTATATCG GCCTGGCGTT CGTCGCCGCC GGATTCCTGT TTGCGCTGCG CGAGATCACC AAGAACCTGC AAAAGATCTT CGTCGATGCG CTGACCGCCC GCGACCGCGA GGCGGCGCTG GCCAACCAGT TCGATACTGC GCTGAACAAC ATGCCGCATG GCCTCTGCAT GTTTCGCCCG GACGGGCGTC TTGCCGTCAT GAATCACCGG TTCGGCGAGA TGATGAGCCT GCCGGAGGAC ATCCTGCAGT CCGGCGGCAC CGCCGCCGAT ATCATCAATG CCTGCGTGCT CTCCGGATCG ATTTCGGCCG CCAGCGGCAG GCTGATCCTG TCGGAGATCG AGAACACCAA GACCCACAAT ATCATCACCA GCGATCCGGA CATCATGCGT GACCGGTCGC TGTCCTGGAC GTTCCAGCCG ATGGCGGATG GCGGCGCCGT GGTGCTGCTC GAAGACATCA CGGAGCGCCG CCATGCGGAG GCGCGGATCT CGCATCTCGC CCGCTATGAC GAGCTCACGA CGCTGCCCAA CCGCGTCAGC TTCCGCGACG AAATCGAGCG GCTGCTGAGA ATCCCGCCGC GCCAGGGTGA GCTCTCGGCG CTGCTGTTCG TCGACCTCGA TCGCTTCAAA CAGGTCAACG ACACGCTCGG CCACCCCTGC GGCGATCAGC TGCTCTGCGC CGTGTCCGAG CGGCTGCGTG ACATGCTGCG GCCGGAGGAT TTCGTCGCCC GCTTCGGCGG CGATGAGTTC GTGGTATTCC AGCGCAACAT CCGCTCCAAT GACGACGCCG CGGTGTTGGC GCGGCGCATC GTCGACCAGC TGAGCGAGCG CTACAAGATC GACAATCATC TGGTCGAGAT CGGCGCCAGC GTCGGCATCG CCATGACCGC GCCGGGGATC AGCGCCGATA CGCTGCTGAA GAACGCCGAC ATGGCGCTCT ATCGCGCCAA GGCCGAAGGA CGCGGCACGT TCTGCTTCTT CCGCGACGAG CTGGCCCAGA CCGTGGAGGC GCGCCGCATC CTCGAGCTCG ACCTGCGCAA GGCGCTGGCC AACGAGGAAT TCGAGCTGTT CTATCAGCCG CTGGTCAATC TCAAATCCGG CAAGATCTCG ACCTGCGAGG CGCTGCTGCG CTGGAACCAT CCGGTGCGCG GGACCGTGTC TCCGGTCGAC ATCATTCCCG TCGCGGAAGA CATGGGCCTG ATCGTGGATC TCGGCCGGTG GATCCTGCGC AAGGCCTGCC TCGAATGCAT GAAGTGGCCG GACGCCGTCA GCGTCGCCGT CAACTTCTCT CCGCAGCAGT TCCATCAGCG CGACGTCCTG AGCGAGGTCC GCTACGCCCT CGAAGTCTCC GGCCTCCCGC CGCATCGCCT CGAGATCGAG ATCACCGAAT CCTCGCTGTT GCGCAACACC CAGCTGACCC ATGATGTGCT GTCGCAGCTG CACATGCTCG GCGTCCGGAT CTCGCTGGAC GATTTCGGCA CCGGCTATTC GAGCCTCAGC TATCTGCATA ATTTCCCGCT CGAGAAGGTG AAGATCGATC GCTCCTTCCT CGAGGGCATC GATACCGACC GCCCGTTGAC CTTGCTGCGC GGTGTCGCCC GGCTGTCTGC CGATCTCGGC ATGTCGGTTG TGGTCGAGGG CATCGAAACC AACGAGCAGC TCGAGCTGGT CAGTGCCGAT GGCACGGTGA CCGAGGCGCA AGGCTATCTG TTCAGCCGCC CCGTGCCTGC CATACGCATC CGCCAGCTCC TGAACGCCTC GCATGGCCGG CGAATGACCG ACGAGGCGAT CACTCCCCTT AACGGAATCC GCTCGATCGC CTGA
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Protein sequence | MQVIKQSDEI DQRLQSSINA ALVDSLFQNP QSLGAGAALV AMAAALTATK TGLTSLWCCV GLLVLSGGWR TFDMYCYRVG RLHSTPALAQ KWEMRYQFGA ILYAAALGLW CAVGLLATTD TVVHMISIVV TVGYIAGGVG RTFGRPWIYH LQIALSFGIT SIALILHGTI YYIGLAFVAA GFLFALREIT KNLQKIFVDA LTARDREAAL ANQFDTALNN MPHGLCMFRP DGRLAVMNHR FGEMMSLPED ILQSGGTAAD IINACVLSGS ISAASGRLIL SEIENTKTHN IITSDPDIMR DRSLSWTFQP MADGGAVVLL EDITERRHAE ARISHLARYD ELTTLPNRVS FRDEIERLLR IPPRQGELSA LLFVDLDRFK QVNDTLGHPC GDQLLCAVSE RLRDMLRPED FVARFGGDEF VVFQRNIRSN DDAAVLARRI VDQLSERYKI DNHLVEIGAS VGIAMTAPGI SADTLLKNAD MALYRAKAEG RGTFCFFRDE LAQTVEARRI LELDLRKALA NEEFELFYQP LVNLKSGKIS TCEALLRWNH PVRGTVSPVD IIPVAEDMGL IVDLGRWILR KACLECMKWP DAVSVAVNFS PQQFHQRDVL SEVRYALEVS GLPPHRLEIE ITESSLLRNT QLTHDVLSQL HMLGVRISLD DFGTGYSSLS YLHNFPLEKV KIDRSFLEGI DTDRPLTLLR GVARLSADLG MSVVVEGIET NEQLELVSAD GTVTEAQGYL FSRPVPAIRI RQLLNASHGR RMTDEAITPL NGIRSIA
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