| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_6646 |
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| Symbol | xylR |
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| ID | 5150997 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bradyrhizobium sp. BTAi1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009485 |
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| Strand | + |
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| Start bp | 6915702 |
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| End bp | 6917465 |
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| Gene Length | 1764 bp |
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| Protein Length | 587 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640561338 |
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| Product | xylR-like aromatic hydrocarbon degradgation transcriptional regulatory protein |
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| Protein accession | YP_001242452 |
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| Protein GI | 148257867 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.165566 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGGGAA GACGTCAGGA TCGGAAGATC TCACTCGCGG AAGCCGCTCA ACAACAGGGG
CAACGGCCGG ACCGAGGCAC CAGCCGCGCG CTTGAAGATG GCGCCAGTCC GACGCTGCGG
GACCTGACCG AGGTGCTGCA TTTTGCACTC GGGGATGGTC GCATCTGGCT GAACGATCAA
CGCATGGTGC TGATGCAGTC GCTGGTGCTC GGACGCCTTC GCGCCGAGAT CATCGATGCG
TTCGGCTTCG AAACGGCGCG CGCTATCTTC ATGCGGGTGG GCTTCATGCA AGGCGTCCGC
GACGCCGAAC TGATCAGCCA ACGATTTCCG CAGGACGACC TGACCCGCGC GCTCGCTGCA
GGCCCCCGCG TTCATACACT GGAAGGCTTC GTCAAGGTGA CGACGAAGCA TTTCGAGTTC
GACCGGACCA AGGGCACCTA TTACGGCGAA TTCCACTGGG ACGATTCCTC CGAGGCCGCC
GAGCATGTTG CGGGCTACGG ACTGGCGTCC GAGCCGGTGT GCTGGATGCA GACCGGCTAT
CCCTCGGGCT ACACGTCCAA GCTGCTCGGC CGCACCGTCA TCTTTCGCGA GATGGAATGT
GCCGGAATGG GTGCGCCGCG CTGCCTTGTA ATCGGGCGGG AGGCGGAGGC GTGGGGCAAG
GACGCTCCGG AGCGCGAATA TCTCGGACTC GAGTGGCGCG CACGCCGTCG ATCACCGGCG
CCACCCCGAG TTCCGTCCCG GGCAAGTCGG CCGGCGCCAG CAATGGACGG CGGCGTCGCC
GTAGGCGTGT CGACAGGCTT TCTGCGCACA CGGCTGATGA TGGAAAAGGT GGCGCCGACC
GACGCCACGG TGCTCGTCAT CGGCGAATCC GGCGTCGGCA AGGAGCTGTT TGCGAACCAG
CTCCACGACA TGAGCGCCCG GCGAAGCGGC CCCTTCATCC CGATCAACTG TGCGGCAATC
CCCGAAACGC TGGTGGAATC GGAATTGTTC GGCGTCGAAC GCGGCGCCTT CACCGGCGCA
ATCGCGTCCC GGCCCGGCTA TTTCGAGCGC GCCTCGGGCG GCACGCTGTT TCTCGACGAG
ATCTCCTCGC TTGCCTATTC CGCGCAAGGC AAGCTGCTGC GCGCATTGCA GGAGCGCAAG
ATCGAGCGGG TCGGCGGAGG CAAGACGATC CCGGTCAATG TGCGCGTCGT GGCCGCGGCG
AACGTGGATT TGTCCGAGGA GGTTCAGGCC GGACGCTTCC GCCAGGATCT GTATTTCCGG
CTCAGCGTGT TTCCGATCCT GATTCCGCCG CTGCGCGAGC GTCGCGACGA CATTCCGCTG
CTGATGTCGC ATTTCCTGCG GCTGTTCAAC GCGAAACACG GGCGCAAGGT CCTCGGCTTC
ACCAGGGCTG CGACCGACGC GTTGCTCGGC TACGGCTTTC CAGGCAATAT CCGTGAATTG
CAGAACCTCG TCGAACGCGG TGTCATCTTC GCCGATGACG AGCGCCAGAT CGACCAGCAT
CATCTGTTCA TCGGCAATGA GCGCCTGTCA TCGGCATTGC GGCTGACGGA TATGGGACGC
GTCGAGCAGG CTCCCGATTC CGCAGCCGAC GCAGGGCGGC GTCAACCGTC GTCGCCAGGA
TCGGAGGTGG AGGCGCTCCG CCACGCGGAG CAGGCGCTCT ATGCGAGAGC GCTCGCCGCG
GCCGACGGCA ACGTCTCAGC TGCGGCACGC GCGCTCGGAA TGAGTCGTGC CAAGCTCGAA
TATCGCCTCA GAAAACAGCG GTGA
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| Protein sequence | MAGRRQDRKI SLAEAAQQQG QRPDRGTSRA LEDGASPTLR DLTEVLHFAL GDGRIWLNDQ
RMVLMQSLVL GRLRAEIIDA FGFETARAIF MRVGFMQGVR DAELISQRFP QDDLTRALAA
GPRVHTLEGF VKVTTKHFEF DRTKGTYYGE FHWDDSSEAA EHVAGYGLAS EPVCWMQTGY
PSGYTSKLLG RTVIFREMEC AGMGAPRCLV IGREAEAWGK DAPEREYLGL EWRARRRSPA
PPRVPSRASR PAPAMDGGVA VGVSTGFLRT RLMMEKVAPT DATVLVIGES GVGKELFANQ
LHDMSARRSG PFIPINCAAI PETLVESELF GVERGAFTGA IASRPGYFER ASGGTLFLDE
ISSLAYSAQG KLLRALQERK IERVGGGKTI PVNVRVVAAA NVDLSEEVQA GRFRQDLYFR
LSVFPILIPP LRERRDDIPL LMSHFLRLFN AKHGRKVLGF TRAATDALLG YGFPGNIREL
QNLVERGVIF ADDERQIDQH HLFIGNERLS SALRLTDMGR VEQAPDSAAD AGRRQPSSPG
SEVEALRHAE QALYARALAA ADGNVSAAAR ALGMSRAKLE YRLRKQR
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