Gene BBta_6441 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBBta_6441 
SymbolcrtD 
ID5155342 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBradyrhizobium sp. BTAi1 
KingdomBacteria 
Replicon accessionNC_009485 
Strand
Start bp6710068 
End bp6711597 
Gene Length1530 bp 
Protein Length509 aa 
Translation table11 
GC content69% 
IMG OID640561141 
Producthydroxyneurosporene and rhodopin dehydrogenase 
Protein accessionYP_001242257 
Protein GI148257672 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG1233] Phytoene dehydrogenase and related proteins 
TIGRFAM ID[TIGR02734] phytoene desaturase 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCGATC ACCGCGTGAT CGTGATTGGC GCCGGCATTG CCGGCCTTGC AGCTGCGCTC 
ACGCTCGCGG CACGCGGCGC TGCGGTGACG CTGCTGGAGC GCGCCCCCTC GCCTGGCGGC
AAGATGCGCC AGATCCCCAT CGGCCCCGCA CGTATCGACT CCGGCCCCAC CGTGTTCACG
ATGCGCTGGG TGTTCGACGA ATTGTTCGCC GAGATCGGCA CCGCGCTCGA CGACCATCTC
ACCTTGATGC CGCTCGAGAT TCTCGCCCGT CACGCCTGGA CCGACGGCAG CCGGCTCGAT
CTGTTCGCCG ACGAGGACAG ATCGGCCGAT GCCATCGGTC GGTTCGCCGG ACGCAGCGAG
TCCGAAGGCT ATCGCGCCTT CTGTCGCGAT GCCCGCCGCA TCTTCGAGGT GCTGCGCGAT
CCCTTCATCC GCACGCCGGC ACCGAGCATG ACACATCTGC TGCGCAATGC CGGCTTCCGC
GACCTCACCG CGATCCGCCC GTTCCAGACG CTGTGGAAGG CGCTCGGCGG CTATTTTCGC
GATGTCAGGT TGCAGCAGTT GTTCGGCCGT TACGCGACCT ATTGCGGCTC GTCGCCGTTC
CATGCGCCGG CGACTTTGAT GCTGGTCGCC CATGTCGAGC AGGCCGGCGT CTGGCTGATC
GGCGGCGGCA TGCACGAGCT CGCAGCCTGT CTCGCCGCAA TGGCCAAACG CCACGGCGTG
ACCCTTCGCT ATGACTGCGA CGTCGCCGGC ATCGTGACAC AGGGCGGCCG CGCCGCCGGC
GTGCGCCTCG CCGATGGCGA GCAGATCACA GCCGACGCGG TGATCGCGAC CGCCGATGTC
GCGGCGCTGG CGCAGGGCCT GTTCGGTGCT GACGCGGCGC GGGCCCTTCC CGCGTTGCCT
CGGTCCGCGC GCTCGCTGTC GGCCATGACC TGGAGCTGCA TGGCGCGCGC CGACGGTTTT
CCGCTGCTGC GTCACAACGT GTTCTTCTCG CGCGACTACC GCGCCGAGTT CGATCAGCTG
ATCGACGCGC GCGCGATGCC GCAGCAGCCG ACCGTCTATG TCTGCGCGCA GGCACGCGAC
GACCAGCCCC GCAATGCCGG CACCAGCGAG CCGCTGTTCG TCCTGATCAA TGCGCCTGCC
ACCGGCGACC ACCACCGCTT CGAGTCCTCG GAGATCAGCC AATGTGCCCG CCAGACCTTC
GACCTGTTGC AGCGCTGCGG CCTCAGCGTC GCGACGACAC CGGAACTGAC CCGCGTGACG
ACGCCGGTGG ATTTCAACCG GATGTTTCCG GGCACGGGGG GCGCGCTGTA CGGCCGCAGC
TCGCATGGCT GGATGGCGTC GTTCCAGCGC CCGGGGGCGC AGACGAAACT GCCGGGACTC
TACATAGCCG GGGGCAGCGC GCATCCGGGG CCGGGCGTGC CGATGGCGGC GCTGTCGGGC
CGGATGGTAG CCGCGCGGGC GATTCTGGAC CTCGCTTCGA CCGCGCCATC CCGAAGGACG
GCTATGCATG GTGGTATGTC GACGCGCTGA
 
Protein sequence
MADHRVIVIG AGIAGLAAAL TLAARGAAVT LLERAPSPGG KMRQIPIGPA RIDSGPTVFT 
MRWVFDELFA EIGTALDDHL TLMPLEILAR HAWTDGSRLD LFADEDRSAD AIGRFAGRSE
SEGYRAFCRD ARRIFEVLRD PFIRTPAPSM THLLRNAGFR DLTAIRPFQT LWKALGGYFR
DVRLQQLFGR YATYCGSSPF HAPATLMLVA HVEQAGVWLI GGGMHELAAC LAAMAKRHGV
TLRYDCDVAG IVTQGGRAAG VRLADGEQIT ADAVIATADV AALAQGLFGA DAARALPALP
RSARSLSAMT WSCMARADGF PLLRHNVFFS RDYRAEFDQL IDARAMPQQP TVYVCAQARD
DQPRNAGTSE PLFVLINAPA TGDHHRFESS EISQCARQTF DLLQRCGLSV ATTPELTRVT
TPVDFNRMFP GTGGALYGRS SHGWMASFQR PGAQTKLPGL YIAGGSAHPG PGVPMAALSG
RMVAARAILD LASTAPSRRT AMHGGMSTR