Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BBta_6441 |
Symbol | crtD |
ID | 5155342 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Bradyrhizobium sp. BTAi1 |
Kingdom | Bacteria |
Replicon accession | NC_009485 |
Strand | + |
Start bp | 6710068 |
End bp | 6711597 |
Gene Length | 1530 bp |
Protein Length | 509 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 640561141 |
Product | hydroxyneurosporene and rhodopin dehydrogenase |
Protein accession | YP_001242257 |
Protein GI | 148257672 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG1233] Phytoene dehydrogenase and related proteins |
TIGRFAM ID | [TIGR02734] phytoene desaturase |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCGATC ACCGCGTGAT CGTGATTGGC GCCGGCATTG CCGGCCTTGC AGCTGCGCTC ACGCTCGCGG CACGCGGCGC TGCGGTGACG CTGCTGGAGC GCGCCCCCTC GCCTGGCGGC AAGATGCGCC AGATCCCCAT CGGCCCCGCA CGTATCGACT CCGGCCCCAC CGTGTTCACG ATGCGCTGGG TGTTCGACGA ATTGTTCGCC GAGATCGGCA CCGCGCTCGA CGACCATCTC ACCTTGATGC CGCTCGAGAT TCTCGCCCGT CACGCCTGGA CCGACGGCAG CCGGCTCGAT CTGTTCGCCG ACGAGGACAG ATCGGCCGAT GCCATCGGTC GGTTCGCCGG ACGCAGCGAG TCCGAAGGCT ATCGCGCCTT CTGTCGCGAT GCCCGCCGCA TCTTCGAGGT GCTGCGCGAT CCCTTCATCC GCACGCCGGC ACCGAGCATG ACACATCTGC TGCGCAATGC CGGCTTCCGC GACCTCACCG CGATCCGCCC GTTCCAGACG CTGTGGAAGG CGCTCGGCGG CTATTTTCGC GATGTCAGGT TGCAGCAGTT GTTCGGCCGT TACGCGACCT ATTGCGGCTC GTCGCCGTTC CATGCGCCGG CGACTTTGAT GCTGGTCGCC CATGTCGAGC AGGCCGGCGT CTGGCTGATC GGCGGCGGCA TGCACGAGCT CGCAGCCTGT CTCGCCGCAA TGGCCAAACG CCACGGCGTG ACCCTTCGCT ATGACTGCGA CGTCGCCGGC ATCGTGACAC AGGGCGGCCG CGCCGCCGGC GTGCGCCTCG CCGATGGCGA GCAGATCACA GCCGACGCGG TGATCGCGAC CGCCGATGTC GCGGCGCTGG CGCAGGGCCT GTTCGGTGCT GACGCGGCGC GGGCCCTTCC CGCGTTGCCT CGGTCCGCGC GCTCGCTGTC GGCCATGACC TGGAGCTGCA TGGCGCGCGC CGACGGTTTT CCGCTGCTGC GTCACAACGT GTTCTTCTCG CGCGACTACC GCGCCGAGTT CGATCAGCTG ATCGACGCGC GCGCGATGCC GCAGCAGCCG ACCGTCTATG TCTGCGCGCA GGCACGCGAC GACCAGCCCC GCAATGCCGG CACCAGCGAG CCGCTGTTCG TCCTGATCAA TGCGCCTGCC ACCGGCGACC ACCACCGCTT CGAGTCCTCG GAGATCAGCC AATGTGCCCG CCAGACCTTC GACCTGTTGC AGCGCTGCGG CCTCAGCGTC GCGACGACAC CGGAACTGAC CCGCGTGACG ACGCCGGTGG ATTTCAACCG GATGTTTCCG GGCACGGGGG GCGCGCTGTA CGGCCGCAGC TCGCATGGCT GGATGGCGTC GTTCCAGCGC CCGGGGGCGC AGACGAAACT GCCGGGACTC TACATAGCCG GGGGCAGCGC GCATCCGGGG CCGGGCGTGC CGATGGCGGC GCTGTCGGGC CGGATGGTAG CCGCGCGGGC GATTCTGGAC CTCGCTTCGA CCGCGCCATC CCGAAGGACG GCTATGCATG GTGGTATGTC GACGCGCTGA
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Protein sequence | MADHRVIVIG AGIAGLAAAL TLAARGAAVT LLERAPSPGG KMRQIPIGPA RIDSGPTVFT MRWVFDELFA EIGTALDDHL TLMPLEILAR HAWTDGSRLD LFADEDRSAD AIGRFAGRSE SEGYRAFCRD ARRIFEVLRD PFIRTPAPSM THLLRNAGFR DLTAIRPFQT LWKALGGYFR DVRLQQLFGR YATYCGSSPF HAPATLMLVA HVEQAGVWLI GGGMHELAAC LAAMAKRHGV TLRYDCDVAG IVTQGGRAAG VRLADGEQIT ADAVIATADV AALAQGLFGA DAARALPALP RSARSLSAMT WSCMARADGF PLLRHNVFFS RDYRAEFDQL IDARAMPQQP TVYVCAQARD DQPRNAGTSE PLFVLINAPA TGDHHRFESS EISQCARQTF DLLQRCGLSV ATTPELTRVT TPVDFNRMFP GTGGALYGRS SHGWMASFQR PGAQTKLPGL YIAGGSAHPG PGVPMAALSG RMVAARAILD LASTAPSRRT AMHGGMSTR
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