| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_6329 |
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| Symbol | ligD |
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| ID | 5152645 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bradyrhizobium sp. BTAi1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009485 |
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| Strand | - |
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| Start bp | 6590370 |
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| End bp | 6593057 |
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| Gene Length | 2688 bp |
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| Protein Length | 895 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640561036 |
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| Product | ATP-dependent DNA ligase |
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| Protein accession | YP_001242153 |
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| Protein GI | 148257568 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase
[COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.0632091 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCGCTCA AGAAGCTTTC CACCTACCGC AAGAAGCGCG ATTTCGAGAA AACGGCAGAG
CCGTCCGGCG ACGCCAAGGT CGCGCCCGCC CCGCGGCCTC GCTTTGTGAT CCAGAAGCAT
GATGCGACGC GGCTGCATTA CGACCTACGG CTGGAATTTG GCGGCGTTTT CAAGTCATGG
GCCGTGACCA AGGGGCCATC GCTTGATCCG CACGACAAGC GGCTCGCGGT CGAGGTGGAG
GACCATCCGC TCGACTACGG CGATTTCGAA GGCACGATTC CGGAAGGCGA ATATGGCGGC
GGCACCGTCA TGCTGTGGGA TCGCGGCTAT TGGGATAGCG AGGATCCCGA GCGCGGCTTC
GAGAAGGGCG ATCTGAAATT CACCCTCGAT GGCGAGAAGC TGCATGGCAG CTGGGTGCTG
GTGCGGATGC GCAATGATCG CACCGGCGGC AAGCGTACCA ACTGGCTCTT GATCAAGCAT
CGCGACGAGT TCGCCCGGGA GGGCGCGGCC AACGACATTC TGGAGGCCGA TAGATCCGTC
GCGTCGGGCC GCACGATGGC GCAGATCGCG GCCGGCAAGG GCAGGGCGCC CAAGCCCTTC
ATGCTCGGCA AGACCAAGCG CATGAATGCC GACGCGGTGT GGCACTCCAA CCGTAGCGAC
AGCAAGGCCT CGCCCGCGCG GAAGCTGGCG CCGAAATCCA AACCGGCGAA GGTCGCCGGT
CGGCCGAAAC AGGCCGCGCC GCGGAGCGTG GCATCGCTGC CGGACTTCGT CCCGCCCGAG
CTCTGCACCT CCGTGGCGCA GCCGCCGAGC GGCGAGGGCT GGGCGCATGA GATCAAGTTC
GACGGCTACC GCGTGCAGAT CAGGGTCGAA GACGGCAGGG CCACCCTCAA GACGCGCAAG
GGCCTGGACT GGACCGCCAA GTTCGGCGCC ATTGCCGAGG AAGCCGGCAA GCTGCCCGAC
GCGATCATCG ATGGCGAGAT CGTCGCGCTC GAGCAGGACG GCAATCCGAA TTTCTCGGCG
CTGCAGGCGG CGATCTCTGC GGGCCAGACC GATGAGTTGA TCTTCTTTGC CTTCGACCTG
ATGTTCGTCG ACGAGTTCGA CCTGCGCCGT CAGCCGCTGC GCGAGCGCAA GGCGCGGCTT
GCAAAGCTCT TGAAGGCAAG CATCAAGGGC AAGACGCCGC GCATTCGTTA TGTCGAGCAT
TTCGAGAGCG ACGGCGAGGC GGTGCTGGAG TCCGTGCGCA AGCTGAAGCT CGAAGGCATC
GTCTCGAAGA AGCTCGACTC CGCCTATCAC TCCGGGCGAA CCGAGAGCTG GACCAAGGCC
AAGACCCGGC CCGGCCACGA GGTCGTCATT GGCGGCTGGA AGACCACCAA TGGCAAATTC
CGTTCGCTGA TGGTCGGCGT CACCCAGGAC GATCATCTCG CTTATGTCGG CATCGTCGGC
ACCGGCTTCG GCCAGGACAC GGTGAAGGAG ATCATGCCGG CGCTGCAGGC GGCTGCGGCT
GACAAGAGCC CGTTCGGCGG CAAGAACGCG CCCCGCAAGG CGCGCGACGT GCATTGGGTG
AAGCCCGAGC TGGTCGCCGA GATCGAGTTT GCAGGCTTTA CCGGCGACGG CAATGTCCGG
CAGGCCTCGT TCAAGGGCCT GCGTCAGGAC AAGCCGGCAC GCGAGGTCGT CGCGGAGCAG
CCGGTCGTCG CCAGGAAAGT GACGAAGCCG GTGGCGCGTG CTGCGGCGAC GGTCGCGACG
GGCGGCGCCA CCGTGCACAA GACGCCGTCG CGGTCGAAGA GCTCAGCCAC GGTGATGGGC
GTTGCGATCT CGAAACCCGA CAAGGCGCTG TGGCCGGACG CCGGCGACGG CGAACTGGTC
ACCAAGCTCG ATCTGGCGAA CTATCTCGCC GCGGTCGGCG ACTGGATGAT CGTGCATCTG
AAGGGACGGC CGTGCTCGAT CGTCCGCGCG CCCGATGGCA TCGCTGGCGA GACCTTCTTC
CAGCGGCACG GCATGCAGGG CATGTCCGAC CTGCTCGAAC TCGTCAAAGT CTCCGGCGAT
CGCAAGCCCT ATCTGCAGAT CGATCGCGTC GAGGGACTGA TTGCCGTGGC TCAGGTCGCA
GCGGTCGAGC TGCATCCATG GAACTGCGCG CCTGACGCCT ATGACGTGCC GGGCCGGCTG
GTGTTCGATC TCGATCCGGC GCCGAATGTG GCATTTGAGG CGGTGATGGC AGCCGCCAAG
GAGATGCGGC AGCGACTGGA GAGCCTCGGC CTGGAAAGCT TCTGCAAGAC CACCGGCGGC
AAGGGCCTGC ACGTCGTGGT GCCGCTGCGC CATGGCGCGC GCGACAGGGT GACGTGGCCG
GAGGCGAAGG CCTTTGCGCA GGGCGTGTGC CAGTGGATGG CCAATGACAG TCCAGATGAC
TATCTGCTGA ACATGTCGAA GAAGCTGCGC AAGGGAAAGA TCTTCCTCGA CTATCTGCGC
AACGACCGGA TGTCGACGGC TGTGGCGGTG TTGTCACCCC GGGCGCGGGA AGGCGCGACG
GTGTCGATGC CGGTGACCTG GGCGCAGGTG AAGAACGGGC TCGATCCGAA GCGCTACACC
GTTCGCACGG TCCCGGCGCT GCTGGCCAAG ACCAAGGCAT GGGAGGGGTA TGACGACGCG
GCCCGATCGA TCAAGCCGGC GATCAAGAAG CTGACGGACA AATTGTAG
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| Protein sequence | MALKKLSTYR KKRDFEKTAE PSGDAKVAPA PRPRFVIQKH DATRLHYDLR LEFGGVFKSW
AVTKGPSLDP HDKRLAVEVE DHPLDYGDFE GTIPEGEYGG GTVMLWDRGY WDSEDPERGF
EKGDLKFTLD GEKLHGSWVL VRMRNDRTGG KRTNWLLIKH RDEFAREGAA NDILEADRSV
ASGRTMAQIA AGKGRAPKPF MLGKTKRMNA DAVWHSNRSD SKASPARKLA PKSKPAKVAG
RPKQAAPRSV ASLPDFVPPE LCTSVAQPPS GEGWAHEIKF DGYRVQIRVE DGRATLKTRK
GLDWTAKFGA IAEEAGKLPD AIIDGEIVAL EQDGNPNFSA LQAAISAGQT DELIFFAFDL
MFVDEFDLRR QPLRERKARL AKLLKASIKG KTPRIRYVEH FESDGEAVLE SVRKLKLEGI
VSKKLDSAYH SGRTESWTKA KTRPGHEVVI GGWKTTNGKF RSLMVGVTQD DHLAYVGIVG
TGFGQDTVKE IMPALQAAAA DKSPFGGKNA PRKARDVHWV KPELVAEIEF AGFTGDGNVR
QASFKGLRQD KPAREVVAEQ PVVARKVTKP VARAAATVAT GGATVHKTPS RSKSSATVMG
VAISKPDKAL WPDAGDGELV TKLDLANYLA AVGDWMIVHL KGRPCSIVRA PDGIAGETFF
QRHGMQGMSD LLELVKVSGD RKPYLQIDRV EGLIAVAQVA AVELHPWNCA PDAYDVPGRL
VFDLDPAPNV AFEAVMAAAK EMRQRLESLG LESFCKTTGG KGLHVVVPLR HGARDRVTWP
EAKAFAQGVC QWMANDSPDD YLLNMSKKLR KGKIFLDYLR NDRMSTAVAV LSPRAREGAT
VSMPVTWAQV KNGLDPKRYT VRTVPALLAK TKAWEGYDDA ARSIKPAIKK LTDKL
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