| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_6162 |
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| Symbol | ligA |
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| ID | 5155320 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bradyrhizobium sp. BTAi1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009485 |
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| Strand | - |
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| Start bp | 6394269 |
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| End bp | 6396419 |
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| Gene Length | 2151 bp |
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| Protein Length | 716 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640560873 |
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| Product | DNA ligase (polydeoxyribonucleotide synthase (NAD+)) |
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| Protein accession | YP_001241992 |
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| Protein GI | 148257407 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.0825564 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGAAGA CAGCAAAACC GAAGAAGCCC GTGGACGTTG CGGAACTCAC CAAGGCGCAG
GCCAAGGTGG AATGGAAACG GCTCGCCTTG GAGCTCGAGG TCCATGATCG GCTCTACTAC
CAGGACGACG CGCCCAAGAT CTCGGACGCC GAATATGACG AGCTGCGCCG TCGCTTCAAC
GCCATCGAGA CACGCTTCCC GGAGCTCGTG AGCAGCGAAT CTCCGTCGCA GAAGGTTGGC
GCCTCGCCCT CGGGCCGCTT CAAGAAGGTC CGGCATGCGG TGCCGATGCT GTCGCTCGAC
AACGCCTTCG CCGAGGAGGA TGTGCGCGAC TTCGTCGGCC GGATCGCGCG GTTCCTGAAG
CTTGCCGATG ATCGCATCGA TTTCTCGGCC GAGCCGAAGA TCGACGGCCT GTCGATGTCG
CTGCGCTATG AGGGCGGTGA ACTCGTCACC GCGGCGACTC GTGGCGATGG CGCGGAGGGG
GAGGACGTCA CCGCCAACAT CCGCACCCTG AAGGATGTTC CGCAGAAACT GCATGGTCGC
AACTGGCCTG ATGTCTGCGA GGTCCGCGGC GAGGTCTACA TGACCAAGCA GGCCTTCCTC
GCGCTCAATG AGCGCCAGAA GGAGGCCGGC GACACCATCT TCGCCAATCC GCGCAACTCC
GCCGCCGGCT CGCTGCGCCA GAAGGACCCG GCCATCACGG CCTCGCGGCC GCTCGGCTTC
TTCGCCTATG CCTGGGGCGA GATCAGCGGC ACACCGCCGG CAGAGACGCA GACCGGCATG
ATCAAATGGT TCGAGCAGTG CGGCTTCACC ACCAATCCGC TCACCAGGCT GTGCCACTCG
GTCGAGGAAC TGATCGCGTT TCACCGCTCG ATCGAGGAGC AGCGCGCCGA GCTCGACTAC
GACATCGACG GCGTCGTCTA CAAGGTCGAC CGTATCGACT GGCAGGAGCG GCTCGGATTC
GTGTCGCGCA CGCCGCGCTG GGCCATCGCG CATAAATTTC CCGCCGAGCG CGCCATGACG
GTGCTCAAGG ACATCGAGAT CCAGGTCGGC CGCACCGGCT CGCTGACGCC GGTCGGCAAG
CTGGAGCCGG TGGGGGTCGG CGGCGTCATC GTGCAGAACG TCACCTTGCA CAACGAGGAC
TACATCAAAG GCATCGGCAA CAAGGGTGAG GTGCTGCGCG AGGGACGCGA CATCCGGATT
GGCGACACCG TCGTGATCCA GCGCGCCGGC GACGTCATCC CGCAGGTGGT GGACGTCGTC
ATCGACAAGC GTCCCGCCCA GGCCAGGCCA TTTCACCTCC CCAAGACGTG CCCTTGTCCC
CTGCACACCG ACGTCGTCCG CGAGGAGACG GCCACCGGTG AGGAGGGCTC GCGTGCACGC
TGCACCGGCG AGTTCGCCTG TCCGTACCAG AAGATCGAGC ACCTGAAGCT GTTCGCCTCG
CGCCGCGCCT TCGACATCGA TGGCCTCGGC GAGAAGCAGA TCGCGTTCTT CTTCGAGCAG
GGCTGGGTCA AGGAGCCCGC CGACATCTTC ACCCTGCAGA AGCGCAACGC CGGACTGAAG
CTGGAGGAGA TCGAGGGTTA TGGCGAGACC TCGGTGCGCA ACCTCTTCAA CGCCATTGAC
GCACGGCGCG AGATCGCGCT GGAGCGGTTC ATCTATGCGC TCGGCATGCG CCATGTTGGC
GAGACCACGG CGCTGGCGCT GGCGCGCGGC TATGGTTCAT GGGATGCCTT TCACGAGGCC
TGCCTGAAGG TGGCCGCGGG CGATGAGGAG GCGATCGCCG AGATGGACGC GCTCGATCAG
ATCGGCGACA CCGTGATCAA GAGCGTCGCG GCTTACTTCG CCGAGGATCA TAATCGCGGC
ATCGTCGAGC GGCTGACGCA GGAGGTGAAG ATCCTCGATG CGGAGAAGCC GAAGCGCCAT
TCGCCGATCG CGACCAAGAC GGTGGTGTTC ACGGGCACGC TGGAAAAGAT GACGCGCGAC
GAGGCCAAGG CCACCGCCGA GCGACTCGGC GCCAAAGTGT CGGGCTCGGT CTCGAAGAAG
ACCGACTACG TCGTCGCCGG TCCCGGCGCT GGCTCCAAGC TGAAGGAGGC CCAGAAGCAC
GGCGTCCAGG TGCTCACCGA GGACGAGTGG CTGCAGCTGA TCGCGGAGTA G
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| Protein sequence | MPKTAKPKKP VDVAELTKAQ AKVEWKRLAL ELEVHDRLYY QDDAPKISDA EYDELRRRFN
AIETRFPELV SSESPSQKVG ASPSGRFKKV RHAVPMLSLD NAFAEEDVRD FVGRIARFLK
LADDRIDFSA EPKIDGLSMS LRYEGGELVT AATRGDGAEG EDVTANIRTL KDVPQKLHGR
NWPDVCEVRG EVYMTKQAFL ALNERQKEAG DTIFANPRNS AAGSLRQKDP AITASRPLGF
FAYAWGEISG TPPAETQTGM IKWFEQCGFT TNPLTRLCHS VEELIAFHRS IEEQRAELDY
DIDGVVYKVD RIDWQERLGF VSRTPRWAIA HKFPAERAMT VLKDIEIQVG RTGSLTPVGK
LEPVGVGGVI VQNVTLHNED YIKGIGNKGE VLREGRDIRI GDTVVIQRAG DVIPQVVDVV
IDKRPAQARP FHLPKTCPCP LHTDVVREET ATGEEGSRAR CTGEFACPYQ KIEHLKLFAS
RRAFDIDGLG EKQIAFFFEQ GWVKEPADIF TLQKRNAGLK LEEIEGYGET SVRNLFNAID
ARREIALERF IYALGMRHVG ETTALALARG YGSWDAFHEA CLKVAAGDEE AIAEMDALDQ
IGDTVIKSVA AYFAEDHNRG IVERLTQEVK ILDAEKPKRH SPIATKTVVF TGTLEKMTRD
EAKATAERLG AKVSGSVSKK TDYVVAGPGA GSKLKEAQKH GVQVLTEDEW LQLIAE
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