| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_6153 |
|---|
| Symbol | rbsC |
|---|
| ID | 5148953 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | - |
|---|
| Start bp | 6380581 |
|---|
| End bp | 6381606 |
|---|
| Gene Length | 1026 bp |
|---|
| Protein Length | 341 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640560865 |
|---|
| Product | putative sugar (D-ribose) ABC transporter (permease protein) |
|---|
| Protein accession | YP_001241984 |
|---|
| Protein GI | 148257399 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1172] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.0302117 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCACAAGA AAGATCTCAG CCTGCTCATC CTGATCCTGG TGGTCGGCAC GGTCGTGGCG
GTCATCAATC CGCGCTTTCT CCTGGTCGGC AACCTTTCCA ACACCGCCAA CCAGGTCGGG
ATGTTCGGCA TCTTCTCGAT CGCGGAGGCT TTCGTGATCA TCGTCGGCGG CATCGAGCTG
GCCGTGGGGT CGGTGATCGC GCTGCTCGGC GTGCTGTTCA TCGACCTGAT CGTGAACCGC
GATGTGAACT GGATGGTGGC CTTCGCCCTG ATCATCGCGG GCGGCATCGC GATCGGGATC
ATGCACGGCA CCCTCACCAC CAAGATGCGC ATTCAGCCCT TCGTGGTGAC GCTGTGCGGG
CTGCTGATCT ATCGCGGCGC CGCGCGCTAT TACACCGAGG ATTCGACCGC CGGCTTCGGC
TATGGTGCAA GCTTCCCGAC ATTGGAATGG CTCACCGCCG GACGGACCAA TGTGCTCGGC
TTTCCGTTGC CGCACAGCGT CGTCGCGCTG GCGATCGTGG CCGGCATCGC CTGGCTGGTG
CTGCACCGCT CGGTCTATGG CCGCTATTTC TACGCGGTCG GCAAGAACGA GGAGGCCGCG
CGCTATTCCG GCATCCGGTC CGACCGGGTC GTGATCTCGG CCTATGTGAT CTGCGGCGGT
CTGACCGCGC TGGCCGCCGT CCTGATCGCA ATGTACACCC GCTCGATCTC GCCGGCCGTG
CACGGCTCGT TCTACGAGCT CTACGCCATC GCGGCCGCCG TGCTCGGCGG CTGCTCGCTG
CGCGGCGGCG AGGGCTCGAT CATCGGCGTG GTGCTCGGGA CGATCCTGCT GCAGGTGCTG
CAGAACCTGG TCAACCTTCT GGGGATTCCG AGCTCGCTGA ACTTCGCCGT GATGGGGACG
GTGATCCTGA TCGGCGTGCT GGCCGACCAG TATTTCGTTC AGCGCCGGCA ACGCAGCGCG
ACGGCCCGGG GGCAGGTCGG CGCCAAGCGG AGCCCGGCGC CGCTGGAGCG CGTTGGCGCG
GAATGA
|
|---|
| Protein sequence | MHKKDLSLLI LILVVGTVVA VINPRFLLVG NLSNTANQVG MFGIFSIAEA FVIIVGGIEL
AVGSVIALLG VLFIDLIVNR DVNWMVAFAL IIAGGIAIGI MHGTLTTKMR IQPFVVTLCG
LLIYRGAARY YTEDSTAGFG YGASFPTLEW LTAGRTNVLG FPLPHSVVAL AIVAGIAWLV
LHRSVYGRYF YAVGKNEEAA RYSGIRSDRV VISAYVICGG LTALAAVLIA MYTRSISPAV
HGSFYELYAI AAAVLGGCSL RGGEGSIIGV VLGTILLQVL QNLVNLLGIP SSLNFAVMGT
VILIGVLADQ YFVQRRQRSA TARGQVGAKR SPAPLERVGA E
|
|---|
| |