| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_6070 |
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| Symbol | |
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| ID | 5154943 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bradyrhizobium sp. BTAi1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009485 |
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| Strand | + |
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| Start bp | 6292941 |
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| End bp | 6294488 |
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| Gene Length | 1548 bp |
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| Protein Length | 515 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640560782 |
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| Product | putative glycine betaine/carnitine/choline ABC transporter (permease and substrate binding protein) |
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| Protein accession | YP_001241903 |
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| Protein GI | 148257318 |
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| COG category | [E] Amino acid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1174] ABC-type proline/glycine betaine transport systems, permease component
[COG1732] Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | CTGTCCGATC CACGCTTCGC CGAGGCGCTG TCGCATCTCG CCGATTATCT CGGCAGCCAT
CTGCGCGTGA GCATCGCCGC GCTCGCGCTG GGACTCGCTG TCAGCTTTCC CCTCGCGCTG
CTGGCACGCA ACCGCCCCAC CTTGCGCAAC CTCCTGCTCG GGATCGCGAG CGTGGTGCAG
ACCGTTCCGG GATTGGCGCT GCTCGCGCTG TTCTACCCGT TGCTGCTTGC ACTCGCCGCG
CTGACCCTGC GCTGGTTCGG CCTGTCATTC TCCGCGTTCG GCTTTCTGCC TGCGGTGCTG
GCGCTGGCGC TGTATTCGAT GCTGCCGGTG CTGCGCAACA CCATCACCGG GCTGAACGGC
GTCGACCCCG GCCTGATCGA GGCCGCCAAG GGCGTCGGCA TGACCGAGCG CCAGGCGCTG
CTCATGGTGG AGCTGCCGCT GGCGCTGCCC GTGATCATGG CCGGCATCCG CACCGCTGCG
GTGTGGGTGA TCGGCACCGC CACCCTGTCG ACGCCGATCG GCCAGACCTC GCTCGGCAAC
TACATCTTTG CCGGGCTGCA GACCCAGAAC TGGGTACTGG TCATGTTCGG CTGCGTCGCC
GCCGCAGTGC TGGCGCTCGC CGTCGATCAG CTGCTGGCCT TCATCGAGCT CGGCCTGCGG
ACACGCAGCC GCGCCCGCGT CGGATCGGGG ACCGCGGCCA TCGCGCTGAT GGTGGGCGCG
AGCCTGCTGC CCTCGCTCGG CAGCAGCCCC GCACGCTACG CGATCGGCGC CAAGACCTTT
ACCGAGCAAT ATGTGCTGTC GGCGCTGATC AGCGAGCGGC TGCAGGCGGC AGGCCTCTCC
GCGACCTCGC GCGCCGGCCT CGGCTCCAGC GTCATTTACG AGGCGCTCAA GAACGGCGAC
ATCGACACCT ATGTCGATTA TTCCGGCACG CTGTGGGCGA ACCAGTTCCA TCATCGGGAG
CAGATGCCCC GCGCGGCGCT GCTCGCGGCC TTGCAGCAGG ATCTCGCTCG GGACAAGATC
ACGTTGCTCG GCGAGCTCGG CTTCGAGAAC GCCTATGCGC TGGTGATGCC GCGCCAGAAG
GCGACGGCGC TCGGCATTCG CACGGTCGAA GATCTCGCAC GCCGCAGCCG GGACATGTCG
ATCGCCGGCG ACTACGAGTT CTTCTCACGC CCGGAATGGG CTGCCTTGCG CGACGCCTAT
GGTCTCGCCT TCCGCACCCA GCGCCAGATG CAGCCGGATT TCATGTATGC CGCGGTGGCC
TCGGGCGAGG TCGACGTCAT CGCCGGCTAC ACCAGCGATG GCCTGATCGC GAAATACGAT
CTCGTCGTGC TCGACGATCC CAAGCATGCG ATCCCGCCCT ATGACGCGAT CCTGCTGGTG
TCGCCCAAGC GGGCCGAGGA CCACGCCCTG CAGGACGCGC TGCGGCCACT GCTCGGCCGC
ATCGACATCG CGACCATGCA ACAGGCGAAT TTGCGCGCCT CCGGCAGCGA CGCGGACTCG
TCACCACAAG CAGTGGCGCG CTGGCTGTGG AGCAGGATCG CGAAGTAG
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| Protein sequence | MSDPRFAEAL SHLADYLGSH LRVSIAALAL GLAVSFPLAL LARNRPTLRN LLLGIASVVQ
TVPGLALLAL FYPLLLALAA LTLRWFGLSF SAFGFLPAVL ALALYSMLPV LRNTITGLNG
VDPGLIEAAK GVGMTERQAL LMVELPLALP VIMAGIRTAA VWVIGTATLS TPIGQTSLGN
YIFAGLQTQN WVLVMFGCVA AAVLALAVDQ LLAFIELGLR TRSRARVGSG TAAIALMVGA
SLLPSLGSSP ARYAIGAKTF TEQYVLSALI SERLQAAGLS ATSRAGLGSS VIYEALKNGD
IDTYVDYSGT LWANQFHHRE QMPRAALLAA LQQDLARDKI TLLGELGFEN AYALVMPRQK
ATALGIRTVE DLARRSRDMS IAGDYEFFSR PEWAALRDAY GLAFRTQRQM QPDFMYAAVA
SGEVDVIAGY TSDGLIAKYD LVVLDDPKHA IPPYDAILLV SPKRAEDHAL QDALRPLLGR
IDIATMQQAN LRASGSDADS SPQAVARWLW SRIAK
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