| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_6063 |
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| Symbol | |
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| ID | 5154614 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bradyrhizobium sp. BTAi1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009485 |
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| Strand | + |
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| Start bp | 6284733 |
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| End bp | 6287474 |
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| Gene Length | 2742 bp |
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| Protein Length | 913 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640560775 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) |
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| Protein accession | YP_001241896 |
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| Protein GI | 148257311 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 51 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCAGGC GGTTTATGCC GCATATTCTG GTCGTCGTTG CGCTGCTCAC CGTCGGCCTG
TCCGGCGGTT ACGAGCTCCT CAGCCATGCG CTGGTCGACC TGCGCTTCCG TCTCGACCGT
CATCCAGCCA GCGGGGAGAT CGCGGTCGTG GCCATCGACC CGCGCTCGAT CGAGGCTATC
GGTGTCTGGC CGTGGCCGCG AACACATCAT GCCCGCTTGG TGGAGCAGCT TCAGCGCGCC
GGCGCACGCG ACATCGCCCT CGACATCGAC TTCAGCGCGC CGTCAGACCC GGCCGCGGAT
CAGGCCTTTG TGGATGCGCT GCTCAGCACC AAGGGGGCCG TGGTGCTGCC GGCCTTCAAG
CAGCTCAAGG ACGCGGTCCT GTTCGCCAAT CGGCCGCTGC CGCGGTTCGA ACAGGAGGCG
TGGTCCGCCT TCGTGAACAT CGTGGTGGAG CGGGACGGCC GCGTCCGAAG CTATGCCTAT
GGCGATTACG ACAAGGACAG CTTCCTGCAG TCGATGGGCG CGTTTCTCGC CGGCAGCAAT
GTCACCAGGG ACACCACGTT CCTGATCGAC TACGGCATCG ACCCGTCATC ATTGCCAAGA
GTGTCCTATG TCGATGTGCT GCACGGCGAC GCGGCGGCGC TGGCCAAGCT CAAGGACAAG
CGCGTCATTG TCGGCTCGAC CGCCGTCGAG CTCGGTGATC ACTACAGCGT TCCGAATGGC
CGCGTCCTGC CGGGCGCCGT GCTACAGGCG CTCGCGGCGG AATCGATCCT CCAGAACCGC
ACGCTGGTCC CGACATCGAG TGTGGCGACC GTCGCGGCTC TGCTGCTGAT CGTCGTCACA
ATGCTGCTCA GCTGGCCGCA TCTGTCGGCC GCGCGGCGCG CCCTGCTGGT CGGGATCCTC
AGCATCACGA TCGAGGTCGT GGCGCTGATT CTACATGATC GCTTCGCGCT GGTGTTCGAC
ACCGCGCTGC TGCAGATCGC GCTGGTCGCC TATCTGGCGG CCACCGCGCT CGACGAGATC
GACTTTCGCG GCCTGCTGCG CCATGTTGCC GAGAGCCGCT TCGAGCGGAT CGCGATGTCG
ATCGGCGACG GGCTGGTGTG CACCGACAAG GACAAGCACA TCACCGTGTG GAATCCCGGC
GCGGTCGCGA TCTTCGGCTA TGGCGCAGAG GAGATCATCG GTCAGCCTTT CGCGCGCTTG
CGGGCGGACC GCAGCGACAC GGACGACCTG TTCCCGCAGC AAGAAGCGGC ACTGCCGGCC
CCCCTATTGC CCGGCGGCGC GACGGTCGAA TTCGAGGGCC GCCGCAAGGA CGGCGAGGTC
TTCCCGGTCG AGGCGAGCGT CTCGGCCTGG CAGGGCGCGG ATGGTCTGCA ATATGGCGTG
ATCCTGCGCG ACATCTCGGT GCGGAAGCGC GAGGCGGAGC GCATTCGTTA TCTGGCCGAG
CACGATACTC TGACCGGGCT GATCAACCGC AACACGCTGC AGACCGAGCT TGCTGCGATG
ATCGAAACGG CAGATGCGGG AGCAGACCGG CTGGTGCTGC TCGTGATCGG CCTCGATGGG
TTCCAGCACA TCAACGACAT GCTGGGCCAC GCCTTCGGCG ATAGCGTGTT GCGTGCGGCC
GCTGAGCGGC TGCGGAGCGA AATCGGCAGC ATGGGCTGCG TCGCCCGGCT CAGCGGCGAC
GAATTCGCCG TCGCCATTCC CTCTTCCGCC ATCGGCGGCA CCGTGGCCGA ACTCGCGGAG
CACGTCTCAC ATCTGTTCGA AACACCGCTG GAAGCCGCCG CGCGGCAGCA GCGCGTCAAG
ATCACCCTTG GCGTCGCGGT TCATCCGGAC GGTGGCCAGA GCGCGGACGA ACTGCTCAGC
AATGCCCACC TCGCGCTGTG CCGCGCCAAG ACCGACCGGC GCGGCAGCCA CATGATCTTC
GAGCCGGCGA TCCGGCAGGA GCTGGAGCGG CGCCTCACCC TCGAAGCCGA GCTGGCGCTC
GCCGTCGAAC GCCGTGAATT CGAGCTGTTC TACCAGCCGC AGGTCGACCT CTCGAGCGGC
CGCGTGATCG GCGCCGAAGC GCTGATCCGC TGGCGGCATC CGACGCGCGG CCTCGTGCCG
CCCGGCGATT TCATCCCGGT GGTCAACACC TCGCCGTTGT CCGAAGCCGT TGCCACCTGG
GTCATGGCGA CCGCCTGCCG ACAGGCACGG GAATGGCAGC TCGCCGGCCA CGAGATCCGG
GTCGGTATCA ACCTGTCGCC GTCGCAGTTC CAGTCCGGCG ATCTCGCCGC CTTCGTCAGC
AAGCTGCTGA CGGTCACCGG CGTGTCACCG GGCCTGATCG AGCTCGAAGT CACCGAGGAC
ATTCTGCTGC ATGACGAACC CGGCGTGCTG CAGACCTTCA ACCGACTGCA GGCGCTCGGC
GTCAGCCTGG TGTTCGACGA TTTCGGCACC GGCTACGCAA GCCTCAGCTA TCTCAAGAAA
TTCCCGCTGG ACGGACTCAA GATCGACCGT TCCTTCGTTC GTGACGTGCT GACCCAGGCC
GATGACGCCG CCATCGTCGG CTCCACCGTC AGCCTGAGCA GGCAGCTCAA TCTGTCCGTC
ATCGCCGAAG GCATTGAGAA CCAGGCGACG GCCGACTTCC TCCTCGCGCT CGGCTGCGAG
CATGGCCAGG GCTATCACTT CGGCAAGCCG ATGCCGGCCG CCGATTTCGA GCGCCGATTC
CTGTCGGCGG ACAACACGGC GCGGCAGGCC GGCGCGGCGT GA
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| Protein sequence | MFRRFMPHIL VVVALLTVGL SGGYELLSHA LVDLRFRLDR HPASGEIAVV AIDPRSIEAI
GVWPWPRTHH ARLVEQLQRA GARDIALDID FSAPSDPAAD QAFVDALLST KGAVVLPAFK
QLKDAVLFAN RPLPRFEQEA WSAFVNIVVE RDGRVRSYAY GDYDKDSFLQ SMGAFLAGSN
VTRDTTFLID YGIDPSSLPR VSYVDVLHGD AAALAKLKDK RVIVGSTAVE LGDHYSVPNG
RVLPGAVLQA LAAESILQNR TLVPTSSVAT VAALLLIVVT MLLSWPHLSA ARRALLVGIL
SITIEVVALI LHDRFALVFD TALLQIALVA YLAATALDEI DFRGLLRHVA ESRFERIAMS
IGDGLVCTDK DKHITVWNPG AVAIFGYGAE EIIGQPFARL RADRSDTDDL FPQQEAALPA
PLLPGGATVE FEGRRKDGEV FPVEASVSAW QGADGLQYGV ILRDISVRKR EAERIRYLAE
HDTLTGLINR NTLQTELAAM IETADAGADR LVLLVIGLDG FQHINDMLGH AFGDSVLRAA
AERLRSEIGS MGCVARLSGD EFAVAIPSSA IGGTVAELAE HVSHLFETPL EAAARQQRVK
ITLGVAVHPD GGQSADELLS NAHLALCRAK TDRRGSHMIF EPAIRQELER RLTLEAELAL
AVERREFELF YQPQVDLSSG RVIGAEALIR WRHPTRGLVP PGDFIPVVNT SPLSEAVATW
VMATACRQAR EWQLAGHEIR VGINLSPSQF QSGDLAAFVS KLLTVTGVSP GLIELEVTED
ILLHDEPGVL QTFNRLQALG VSLVFDDFGT GYASLSYLKK FPLDGLKIDR SFVRDVLTQA
DDAAIVGSTV SLSRQLNLSV IAEGIENQAT ADFLLALGCE HGQGYHFGKP MPAADFERRF
LSADNTARQA GAA
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