Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BBta_6063 |
Symbol | |
ID | 5154614 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Bradyrhizobium sp. BTAi1 |
Kingdom | Bacteria |
Replicon accession | NC_009485 |
Strand | + |
Start bp | 6284733 |
End bp | 6287474 |
Gene Length | 2742 bp |
Protein Length | 913 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640560775 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) |
Protein accession | YP_001241896 |
Protein GI | 148257311 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 51 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTCAGGC GGTTTATGCC GCATATTCTG GTCGTCGTTG CGCTGCTCAC CGTCGGCCTG TCCGGCGGTT ACGAGCTCCT CAGCCATGCG CTGGTCGACC TGCGCTTCCG TCTCGACCGT CATCCAGCCA GCGGGGAGAT CGCGGTCGTG GCCATCGACC CGCGCTCGAT CGAGGCTATC GGTGTCTGGC CGTGGCCGCG AACACATCAT GCCCGCTTGG TGGAGCAGCT TCAGCGCGCC GGCGCACGCG ACATCGCCCT CGACATCGAC TTCAGCGCGC CGTCAGACCC GGCCGCGGAT CAGGCCTTTG TGGATGCGCT GCTCAGCACC AAGGGGGCCG TGGTGCTGCC GGCCTTCAAG CAGCTCAAGG ACGCGGTCCT GTTCGCCAAT CGGCCGCTGC CGCGGTTCGA ACAGGAGGCG TGGTCCGCCT TCGTGAACAT CGTGGTGGAG CGGGACGGCC GCGTCCGAAG CTATGCCTAT GGCGATTACG ACAAGGACAG CTTCCTGCAG TCGATGGGCG CGTTTCTCGC CGGCAGCAAT GTCACCAGGG ACACCACGTT CCTGATCGAC TACGGCATCG ACCCGTCATC ATTGCCAAGA GTGTCCTATG TCGATGTGCT GCACGGCGAC GCGGCGGCGC TGGCCAAGCT CAAGGACAAG CGCGTCATTG TCGGCTCGAC CGCCGTCGAG CTCGGTGATC ACTACAGCGT TCCGAATGGC CGCGTCCTGC CGGGCGCCGT GCTACAGGCG CTCGCGGCGG AATCGATCCT CCAGAACCGC ACGCTGGTCC CGACATCGAG TGTGGCGACC GTCGCGGCTC TGCTGCTGAT CGTCGTCACA ATGCTGCTCA GCTGGCCGCA TCTGTCGGCC GCGCGGCGCG CCCTGCTGGT CGGGATCCTC AGCATCACGA TCGAGGTCGT GGCGCTGATT CTACATGATC GCTTCGCGCT GGTGTTCGAC ACCGCGCTGC TGCAGATCGC GCTGGTCGCC TATCTGGCGG CCACCGCGCT CGACGAGATC GACTTTCGCG GCCTGCTGCG CCATGTTGCC GAGAGCCGCT TCGAGCGGAT CGCGATGTCG ATCGGCGACG GGCTGGTGTG CACCGACAAG GACAAGCACA TCACCGTGTG GAATCCCGGC GCGGTCGCGA TCTTCGGCTA TGGCGCAGAG GAGATCATCG GTCAGCCTTT CGCGCGCTTG CGGGCGGACC GCAGCGACAC GGACGACCTG TTCCCGCAGC AAGAAGCGGC ACTGCCGGCC CCCCTATTGC CCGGCGGCGC GACGGTCGAA TTCGAGGGCC GCCGCAAGGA CGGCGAGGTC TTCCCGGTCG AGGCGAGCGT CTCGGCCTGG CAGGGCGCGG ATGGTCTGCA ATATGGCGTG ATCCTGCGCG ACATCTCGGT GCGGAAGCGC GAGGCGGAGC GCATTCGTTA TCTGGCCGAG CACGATACTC TGACCGGGCT GATCAACCGC AACACGCTGC AGACCGAGCT TGCTGCGATG ATCGAAACGG CAGATGCGGG AGCAGACCGG CTGGTGCTGC TCGTGATCGG CCTCGATGGG TTCCAGCACA TCAACGACAT GCTGGGCCAC GCCTTCGGCG ATAGCGTGTT GCGTGCGGCC GCTGAGCGGC TGCGGAGCGA AATCGGCAGC ATGGGCTGCG TCGCCCGGCT CAGCGGCGAC GAATTCGCCG TCGCCATTCC CTCTTCCGCC ATCGGCGGCA CCGTGGCCGA ACTCGCGGAG CACGTCTCAC ATCTGTTCGA AACACCGCTG GAAGCCGCCG CGCGGCAGCA GCGCGTCAAG ATCACCCTTG GCGTCGCGGT TCATCCGGAC GGTGGCCAGA GCGCGGACGA ACTGCTCAGC AATGCCCACC TCGCGCTGTG CCGCGCCAAG ACCGACCGGC GCGGCAGCCA CATGATCTTC GAGCCGGCGA TCCGGCAGGA GCTGGAGCGG CGCCTCACCC TCGAAGCCGA GCTGGCGCTC GCCGTCGAAC GCCGTGAATT CGAGCTGTTC TACCAGCCGC AGGTCGACCT CTCGAGCGGC CGCGTGATCG GCGCCGAAGC GCTGATCCGC TGGCGGCATC CGACGCGCGG CCTCGTGCCG CCCGGCGATT TCATCCCGGT GGTCAACACC TCGCCGTTGT CCGAAGCCGT TGCCACCTGG GTCATGGCGA CCGCCTGCCG ACAGGCACGG GAATGGCAGC TCGCCGGCCA CGAGATCCGG GTCGGTATCA ACCTGTCGCC GTCGCAGTTC CAGTCCGGCG ATCTCGCCGC CTTCGTCAGC AAGCTGCTGA CGGTCACCGG CGTGTCACCG GGCCTGATCG AGCTCGAAGT CACCGAGGAC ATTCTGCTGC ATGACGAACC CGGCGTGCTG CAGACCTTCA ACCGACTGCA GGCGCTCGGC GTCAGCCTGG TGTTCGACGA TTTCGGCACC GGCTACGCAA GCCTCAGCTA TCTCAAGAAA TTCCCGCTGG ACGGACTCAA GATCGACCGT TCCTTCGTTC GTGACGTGCT GACCCAGGCC GATGACGCCG CCATCGTCGG CTCCACCGTC AGCCTGAGCA GGCAGCTCAA TCTGTCCGTC ATCGCCGAAG GCATTGAGAA CCAGGCGACG GCCGACTTCC TCCTCGCGCT CGGCTGCGAG CATGGCCAGG GCTATCACTT CGGCAAGCCG ATGCCGGCCG CCGATTTCGA GCGCCGATTC CTGTCGGCGG ACAACACGGC GCGGCAGGCC GGCGCGGCGT GA
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Protein sequence | MFRRFMPHIL VVVALLTVGL SGGYELLSHA LVDLRFRLDR HPASGEIAVV AIDPRSIEAI GVWPWPRTHH ARLVEQLQRA GARDIALDID FSAPSDPAAD QAFVDALLST KGAVVLPAFK QLKDAVLFAN RPLPRFEQEA WSAFVNIVVE RDGRVRSYAY GDYDKDSFLQ SMGAFLAGSN VTRDTTFLID YGIDPSSLPR VSYVDVLHGD AAALAKLKDK RVIVGSTAVE LGDHYSVPNG RVLPGAVLQA LAAESILQNR TLVPTSSVAT VAALLLIVVT MLLSWPHLSA ARRALLVGIL SITIEVVALI LHDRFALVFD TALLQIALVA YLAATALDEI DFRGLLRHVA ESRFERIAMS IGDGLVCTDK DKHITVWNPG AVAIFGYGAE EIIGQPFARL RADRSDTDDL FPQQEAALPA PLLPGGATVE FEGRRKDGEV FPVEASVSAW QGADGLQYGV ILRDISVRKR EAERIRYLAE HDTLTGLINR NTLQTELAAM IETADAGADR LVLLVIGLDG FQHINDMLGH AFGDSVLRAA AERLRSEIGS MGCVARLSGD EFAVAIPSSA IGGTVAELAE HVSHLFETPL EAAARQQRVK ITLGVAVHPD GGQSADELLS NAHLALCRAK TDRRGSHMIF EPAIRQELER RLTLEAELAL AVERREFELF YQPQVDLSSG RVIGAEALIR WRHPTRGLVP PGDFIPVVNT SPLSEAVATW VMATACRQAR EWQLAGHEIR VGINLSPSQF QSGDLAAFVS KLLTVTGVSP GLIELEVTED ILLHDEPGVL QTFNRLQALG VSLVFDDFGT GYASLSYLKK FPLDGLKIDR SFVRDVLTQA DDAAIVGSTV SLSRQLNLSV IAEGIENQAT ADFLLALGCE HGQGYHFGKP MPAADFERRF LSADNTARQA GAA
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