Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BBta_6004 |
Symbol | |
ID | 5154105 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Bradyrhizobium sp. BTAi1 |
Kingdom | Bacteria |
Replicon accession | NC_009485 |
Strand | - |
Start bp | 6222874 |
End bp | 6224010 |
Gene Length | 1137 bp |
Protein Length | 378 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640560726 |
Product | AcrB/AcrD/AcrF family mulitdrug efflux protein |
Protein accession | YP_001241848 |
Protein GI | 148257263 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.00823963 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGCTTCTCC TGGTTGCGAC GATTAGTGTC GTGGGTTGCA AGGAGCAGGA GGGGGCGTCG GCAGCCAAGG CGGCGGATGC GCCGGCCGTC GGGTTCATCA CGGTCCAGGC GTCGCCGGTG ACGCTCACGA AGATTCTGCC GGGGCGAATT ACGCCGATGA GGATCGCGGA GGTGCGGCCT CGCATCAGTG GCATCGTGAC AGAGCGGGGC TTCCAGCAGG GCAGCGTCGT CGAGGCGGGG ACGGTACTCT ATCGGATTGA TCCAGCCCCG TTCCAGGTCG AGCTGGATAA GGCCCGGGCC GCACTGGCAA AGGCTGAAGC CGTGCTTTAT CAGGCCGAAC GACAGGAAGA TCGGCTCAAG TCGCTATTGA CGAGCCAGTC GACGTCGCAG GCTCAATATG AGCTTGCGCT GGCAGCCGAG CGCCAGGCGG AGGCTGAAGT GGCGGCACAG AAAGCCGTCG TGGAACAAGC TCAGCTCAAT CTTGAATGGG CGACGGTCAG AGCCCCGATC AAGGGGCGTA TCGGACGTGC ATTGGTGACC GAAGGGGCGC TTGTCAGTCC AACGGATGCG GCGCATCTGG CAACGGTTCA GCAGCTCGAT CCGATCTATG CGGACTTCAC GCAGTCGGCC GGCGAGCTTG CTCAGCTCAA GCGCGACCTT GCTAATGGCA GATTGAAAAA GGTGTCGTCC GAAGCCGCGC GCGTGCGGCT CGTTCTTGAT GATGGATCGG TCTACAAGCA TAGCGGGCGC CTGTTGTTTT CCGACGTGAG CGTCGATCCC AGCACGTCGA AGGTCAATTT GCGCGGGGAA TTCCCGAATC CGGACGCGGA TCTGCTGCCC GGAATGTATG TGCGTGTTCA GATCGAGGAG GCGATCGACG CCGACGGCAT CGTCGTTCCG TCGCAGGCGA TCCAGCGGAC TCCAGCCGGT GGGAGCGCGG TGTTCGTGAT CAACGATCAG CAGAGGGCGA CACTTCAGCC GGTGCGGGTT GGCCGCTCTG TCGATGCCGG CGTCATGATC GAGGACGGTC TGAAGCCTGG ATGGCGCATC GTGGTCGATG GCTTTCAGAA GTTCTCTCCA GGTGAAATGG TGAAGCCGGT CGCCTGGCGG ATCGCCGCTC CGAACTCATC CAATTGA
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Protein sequence | MLLLVATISV VGCKEQEGAS AAKAADAPAV GFITVQASPV TLTKILPGRI TPMRIAEVRP RISGIVTERG FQQGSVVEAG TVLYRIDPAP FQVELDKARA ALAKAEAVLY QAERQEDRLK SLLTSQSTSQ AQYELALAAE RQAEAEVAAQ KAVVEQAQLN LEWATVRAPI KGRIGRALVT EGALVSPTDA AHLATVQQLD PIYADFTQSA GELAQLKRDL ANGRLKKVSS EAARVRLVLD DGSVYKHSGR LLFSDVSVDP STSKVNLRGE FPNPDADLLP GMYVRVQIEE AIDADGIVVP SQAIQRTPAG GSAVFVINDQ QRATLQPVRV GRSVDAGVMI EDGLKPGWRI VVDGFQKFSP GEMVKPVAWR IAAPNSSN
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