| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_5686 |
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| Symbol | |
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| ID | 5149601 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bradyrhizobium sp. BTAi1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009485 |
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| Strand | - |
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| Start bp | 5934046 |
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| End bp | 5934885 |
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| Gene Length | 840 bp |
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| Protein Length | 279 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 640560423 |
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| Product | TPR domain-containing protein |
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| Protein accession | YP_001241545 |
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| Protein GI | 148256960 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.471833 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.415957 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTTGCGGC CGGCTGCGTT CGCGCTGTCC TTTGCCGTCG TGCTGCTCGG CCTCGGCGCC
TGCCAGACCA CCGATCTGCA AGAGGTCACG GGGGCGCTCG GCGGCGGCGC CGACAAGACG
CGCGCGCCGG GCGGCGATCC GCGCGCCGAG CTCGACCAGC TGCGCGAGCG CTTTCGTGCC
ACGCCGAACG ATCCCGATGT GGCGCTGCGC TACGGCACCG CGCTGCGCGG CACCGGCCAG
CGGTCGCAGG CGGTCGCCGT TCTGGAGCAG GCGACGATCG CCAATCCCAG CAACAAGGCG
CTGCTGGCGG CGTATGGCCG CGCGCTGGCC GACAACGGCA ATTTCCAGCA GGCCTTCGAC
GTGCTGAGCC GGGCGCATTC GCCCGAGGAT CCCGACTGGC GCATCCTGTC GGCGCAGGGC
GCCACGCTCG ACCAGCTCGG CCGCCATGAC GAGGCCCGGC AGTATTACGC GACGGCGCTG
AAGATCGCGC CCGACGATCC CTCGGTGCTG TCCAATCTCG GTCTGTCCTA CGCGCTTTCG
AACGAACTGC CCAAGGCCGA GGAGCAGCTG CGCAGGGCCA GCGCGAACCC GGATGCGAGC
CCGCGGGTCA GGACCAATCT CGCCGTCATC GTCGGGCTGC AGGGCCGCAT GGGCGAGGCC
GAGAGCATTG CGCGATCAGG TCTGCCGCCG GCGCAGGCCA ACGCCAATGT CGCTTATGTG
AAGCGCATTC TCGAGCGCCG GCAGGTCGCC CAGCGCGAGC TGGCGACGCG GCGCGATCGC
CCCGCCGCGG GCCAGACCGA CAAGGCACTC GCGCGCGCGC TCAGCCGCGC CGACGACTGA
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| Protein sequence | MLRPAAFALS FAVVLLGLGA CQTTDLQEVT GALGGGADKT RAPGGDPRAE LDQLRERFRA
TPNDPDVALR YGTALRGTGQ RSQAVAVLEQ ATIANPSNKA LLAAYGRALA DNGNFQQAFD
VLSRAHSPED PDWRILSAQG ATLDQLGRHD EARQYYATAL KIAPDDPSVL SNLGLSYALS
NELPKAEEQL RRASANPDAS PRVRTNLAVI VGLQGRMGEA ESIARSGLPP AQANANVAYV
KRILERRQVA QRELATRRDR PAAGQTDKAL ARALSRADD
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