| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_5666 |
|---|
| Symbol | |
|---|
| ID | 5155834 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | - |
|---|
| Start bp | 5910794 |
|---|
| End bp | 5912707 |
|---|
| Gene Length | 1914 bp |
|---|
| Protein Length | 637 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640560404 |
|---|
| Product | putative polysaccharide biosynthesis protein |
|---|
| Protein accession | YP_001241526 |
|---|
| Protein GI | 148256941 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.811762 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGCGCC TGTCCCAACT AACCTCCCGC AACCTGCTGA TCGCCGTCCA CGACCTGCTC
GTCAGCGTCG TCGCGCTGTT TGCCGCGTTC TATATCCGTT TCGAAGGCGC CAGCAGTTTC
TGGGAGCGGG TCCCGCTGCT CCTGCAGCTC CTGCCTTATT TCATCGTCTT CAGCTTCGTG
GTCTTCTATT TCTCCAACCT GCTGACCACG AAATGGCGCT TCATTTCGCT GCCGGACGCG
CTCAACATCG TGCGCGTCGC GACGGTGCTG ACGCTGGCCC TGCTGGTGCT GGACTACATC
ATCGTCGCTC CGAATGTCCG CGGCACCTTC TTCTTCGGCA AGCTCACGAT CATCCTGTAC
TGGTTCCTGG AGATCTTCGC GCTGAGCACG CTAAGGTTTG CCTATCGGTA TTTCCGCTAC
ACGAGGGTGC GCCACCACGC GAGATCCGAG GATGCCGCGC CGGCGCTGCT GATCGGCCGC
ACGGCGGACG CCGAGGTGGT CTTGCGTGGC ATCGAAAGCG GCGCGGTCAA GCGGATCTGG
CCGATCGGAA TCCTGTCGCC TTCGATGGCC GACCGTGGTC AGTTGATCCG CGGCGTGCCG
GTGCTGGGCG GCATCGACGA CATCGAGGAC GTCGCCACGG ACTTTGCCCG CAGGGGCAAG
CCGATCGCGC GCGCGCTGAT GATGCCGACC GCGTTCGAGC CGGACTGCCA TCCGGAGACC
TTCCTGATGC GCGCCCGACG GCTGCGCTTG ATCATCAGCC GGCTGCCTTC GCTGGAGAGC
GGCGATGCTC CGCGACTGGC GCCGGTGGCG GTCGAGGACT TGCTGCTGCG GCCGAGCGAG
AAGATCGATT ACGGACGGCT CGAGGCGCTG GTGAGAGGCA AGGCGGTCGT CGTGACCGGC
GGCGGCGGCT CGATCGGCGC CGAGATCTGC CAGCGTGTGG TGGCGTTCGG CGCGGCGCGG
CTGCTCATCC TGGAGAATTC CGAGCCGGCG CTCTATGCGA TCACCGAGGT ACTCGCGGCC
GCCCCCGAGG CCAAGGTCGC CGTCGAGGGA CGGATCGCCG ACATTCGCGA TCGCGACCGG
GTGTTCGCGC TGATCGGCGA GTTCAAGCCG GATCTCGTGT TTCACGCGGC CGCCCTGAAA
CATGTGCCGA TCCTCGAGCG TGATTGGAGC GAGGGCGTCA AGACCAACAT CTTCGGCTCG
ATCAACGTCG CCGATGCCGC GGTGGCGTCG GGCGCGGAGG CGATGGTGAT GATCTCGACG
GACAAGGCGA TCGAGCCGGT GTCGATGCTC GGACTCACCA AACGTTTCGC CGAGATGTAT
TGTCAGGCGC TCGACCGCCA GCTTGCGGAG CGCCCGATCG GCCGGCCGCC GATGCGGCTG
ATCTCCGTGC GCTTCGGCAA TGTGCTGGCG TCGAACGGCT CGGTGGTGCC GAAGTTCAAG
GCCCAGATCG AGGCGGGCGG CCCGGTCACG GTGACTCATC CGGACATGGT GCGCTACTTC
ATGACCATTC GCGAGGCCTG TGACCTCGTG ATCACCGCGG CCTCGCATGC GCTGGCACCG
GAGCGGCCGG GGGTCTCGGT GTACGTGCTG AACATGGGCC AGCCGGTCCG CATCGTCGAA
CTGGCGGAGC GCATGATCCG CCTCTCCGGA CTGCAGCCGG GCTACGACAT CGAGATCGTG
TTCACCGGGA TTCGTCCAGG CGAGCGCCTG AACGAGATCC TGTTCGCGAG CGAGGAGCCG
CCGGTCGAGA TCGGCGTCGC CGGCATCATG GCCGCCAAGC CGAACGAGCC GCCGATGCAG
ACTCTGAAGG GATGGATCGC GGCGCTGGAC CAGGCCATTG CGCGGAACGA TCCGGTGACG
ATCAAGGCGG TGCTGAAGGA CGCGGTGCCT GAGTTCGGTT CAAGCGCCGC CTGA
|
|---|
| Protein sequence | MTRLSQLTSR NLLIAVHDLL VSVVALFAAF YIRFEGASSF WERVPLLLQL LPYFIVFSFV
VFYFSNLLTT KWRFISLPDA LNIVRVATVL TLALLVLDYI IVAPNVRGTF FFGKLTIILY
WFLEIFALST LRFAYRYFRY TRVRHHARSE DAAPALLIGR TADAEVVLRG IESGAVKRIW
PIGILSPSMA DRGQLIRGVP VLGGIDDIED VATDFARRGK PIARALMMPT AFEPDCHPET
FLMRARRLRL IISRLPSLES GDAPRLAPVA VEDLLLRPSE KIDYGRLEAL VRGKAVVVTG
GGGSIGAEIC QRVVAFGAAR LLILENSEPA LYAITEVLAA APEAKVAVEG RIADIRDRDR
VFALIGEFKP DLVFHAAALK HVPILERDWS EGVKTNIFGS INVADAAVAS GAEAMVMIST
DKAIEPVSML GLTKRFAEMY CQALDRQLAE RPIGRPPMRL ISVRFGNVLA SNGSVVPKFK
AQIEAGGPVT VTHPDMVRYF MTIREACDLV ITAASHALAP ERPGVSVYVL NMGQPVRIVE
LAERMIRLSG LQPGYDIEIV FTGIRPGERL NEILFASEEP PVEIGVAGIM AAKPNEPPMQ
TLKGWIAALD QAIARNDPVT IKAVLKDAVP EFGSSAA
|
|---|
| |