| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_5617 |
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| Symbol | |
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| ID | 5154896 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bradyrhizobium sp. BTAi1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009485 |
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| Strand | - |
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| Start bp | 5848107 |
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| End bp | 5850326 |
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| Gene Length | 2220 bp |
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| Protein Length | 739 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640560359 |
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| Product | SPINDLY family O-linked N-acetylglucosamine transferase |
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| Protein accession | YP_001241481 |
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| Protein GI | 148256896 |
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| COG category | [N] Cell motility
[O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF
[COG3914] Predicted O-linked N-acetylglucosamine transferase, SPINDLY family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.277247 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGCCAGCA ATGTCGGGTC TCGCGCGTTT CAGAATGCGC GGCTGCAGAA GAAGCATCGC
AAGCAGGTCG ACGAGCTGCT GCCGCGGGCC GTCGCGGCCT ATCGCGCCGG CCGCCCAGCC
GAGGCGCAGG CGATCTGCGG ACAGATCCTG GCGCTCTTGC CCGAGCATTT CGATGCGTTG
CATCTGCTCG GCGTCGTCGC CCTCGACAGC GGCCAGCTCG ATATGGCCGA GCAGGCTCTG
ACCAAGGCGG TCGAGGCTGA GCCGCGCCAT GCCGAGGCGC TTTCCAATCT CGGCCTCGCG
CTGTTCAACC GCAAGCGCTA CGAGGAGGCG CGCAAATGCC AGGAGCTGGC GGTCGCGCTG
AAGCCCAATC TCGTGGTCGC GCTCACCGGC CTCGGCAACA CGCTGATGCG CCTGGGACGG
CCGGAGGAGG CCATCGTTGC CCATGATCGG GCGATCGCCC TGAAGCCGGA CTATGCCGAC
GCCTATTGCA ATCGCGGCAT GGCGCTGCTT CCGCTCAATC GCAATGCCGA GGCCAATCAG
AATTTCGATC GCGCGCTGTC GCTCAATCCG CGCCACATGG AGGCGATGTT CGGCAAGGGG
CTGGCCAGCA TCATTCTGCG TCACTTCGAC GATGCGCTGG CGGCGTTCGA TGCCGCGTTG
GCGATCAGGC CCAGAGCCGC GCAGGTGCTG GCGCAGCGCG GCCGGCTGCA CCAGCAGGCC
GGGCGGTTCG ATCCGGCGAT GGCGGATTTC CAGGCGGCGC TGTCGATCGA TCCCCGCCAG
GAGGTGGCGC TGCTCGGCTT TGCCCAGCTC AGCGTGATCA GGGACAATGT CGCGCCGGCG
ATGGACGCTT GCCGCAAGGT GCTGGAGCAG AATCCGGCCT CCGAAGTCGC CTGGACCTGG
CTCGGCGAAT GCTTTGCCAA GCAGGGCGAC CTCACGACGG CCTTGCAGCA CTTCGAGCGC
GCGCTCGAGC TCAAGCCCGA TTTTGGCGAT GCGATCACCG CCAAGATTTT CCTGCTCGAC
TTCATGCCGG AGACCGATTT CGTCCAGCAT CAGGCCGTGA GGCGGCAATG GTGGAGCCGG
ATCGGTGCCC AGATCGCGCG CCGGCCGCCG CCGCTGCGCG ACCGCGATCC CGAACGGCGG
CTGACCATCG GCTATGTCTC GGCGGATTTC AGGACGCATT CGGCCGCCTT GGTGTTCCTG
CCGGTGCTGC GCCATCATGA CCACCAGGCC TTCAAGGTCG CCTGCTATTC CTGCTCGCCG
CTGCAGGACG TGATGACGGC GCAATGCCGC GCAGCCGCCG ATCTGTGGGT CGATGCCTGG
CAGATGTCCG ACGAGGAGCT GGCTGACCGC ATCGAAGCAG ACGGCGTCGA CATCCTCGTC
GACCTCTCCG GCCATTCCGC CGGCAACCGC CTGCCGGTGT TCGCGCGCAA GCCGGCGCCG
GTCCAGGTCA CGGCCTGGGG CAGCGGCACC GGCACCGGCC TGCCGACCAT GGACTATTTC
TTCGCCGATC CGGTGACGGT GCCCGAGGCG GTACGCCCAC TGTTTGCCGA GCAGGTCTAC
GATCTGCCGG CCGTCATCAC CACCGATCCG CTGCAGGGAT GGCAGCCGAC ATCGCTGCCG
ATGCTGCGCA ACGGCTACGT CACCTTCGGT GTCTTCAATC GCATCGACAA GATCTCGGAG
CCCGCGCTCG CGCTCTGGTC GCGGCTGATG GCCGCGTTGC CGGACGCGCG GATCGTCATC
AAGAACGGAG CGCTGCAGGA CCCGTTGCTG CGCGATGGCC TGGTCGCCCG CTTCGTGGCG
CATGGCATCG CGCAGGATCG CATCACCTGC CTCGGCCTGT CGACGCGCGA CCAGCACATC
GCGCAGTTCG CCGCGATCGA TATGTCGCTC GATCCGTTTC CGCAGAATGG CGGCGTCAGC
ACCTGGGAAA CGCTGCAGGC CGGCGTGCCC GTGGTCGCCA AGCTCGGCCG CGGTGCGGCG
GGGCGGGCGG CTGCCGGCAT CATCACGGCA GTGGGGCTGC ATGATTGGGT GGCCGAGGAT
GATGACGGCT ACATCGCGAT CGCCTTGGCG CATGCGGGCC GGCCGGCCGA CTTGGCGAAG
CTGCGCACGG AGCTCCCGTC GATGGTCGCG AGCTCCGCCG CCGGCAATGT CGAAACCTAC
ACCCGCCGCG TCGAGGAGGG CTATCGCCTG TTCTGGCGCC GCTACTGCGC CTCTGGCTGA
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| Protein sequence | MASNVGSRAF QNARLQKKHR KQVDELLPRA VAAYRAGRPA EAQAICGQIL ALLPEHFDAL
HLLGVVALDS GQLDMAEQAL TKAVEAEPRH AEALSNLGLA LFNRKRYEEA RKCQELAVAL
KPNLVVALTG LGNTLMRLGR PEEAIVAHDR AIALKPDYAD AYCNRGMALL PLNRNAEANQ
NFDRALSLNP RHMEAMFGKG LASIILRHFD DALAAFDAAL AIRPRAAQVL AQRGRLHQQA
GRFDPAMADF QAALSIDPRQ EVALLGFAQL SVIRDNVAPA MDACRKVLEQ NPASEVAWTW
LGECFAKQGD LTTALQHFER ALELKPDFGD AITAKIFLLD FMPETDFVQH QAVRRQWWSR
IGAQIARRPP PLRDRDPERR LTIGYVSADF RTHSAALVFL PVLRHHDHQA FKVACYSCSP
LQDVMTAQCR AAADLWVDAW QMSDEELADR IEADGVDILV DLSGHSAGNR LPVFARKPAP
VQVTAWGSGT GTGLPTMDYF FADPVTVPEA VRPLFAEQVY DLPAVITTDP LQGWQPTSLP
MLRNGYVTFG VFNRIDKISE PALALWSRLM AALPDARIVI KNGALQDPLL RDGLVARFVA
HGIAQDRITC LGLSTRDQHI AQFAAIDMSL DPFPQNGGVS TWETLQAGVP VVAKLGRGAA
GRAAAGIITA VGLHDWVAED DDGYIAIALA HAGRPADLAK LRTELPSMVA SSAAGNVETY
TRRVEEGYRL FWRRYCASG
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