| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_5448 |
|---|
| Symbol | alaS |
|---|
| ID | 5149874 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | - |
|---|
| Start bp | 5667077 |
|---|
| End bp | 5669767 |
|---|
| Gene Length | 2691 bp |
|---|
| Protein Length | 896 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640560195 |
|---|
| Product | alanyl-tRNA synthetase |
|---|
| Protein accession | YP_001241319 |
|---|
| Protein GI | 148256734 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0013] Alanyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00344] alanine--tRNA ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.10309 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGGCG TCAACGAGAT CAGGTCGACC TTCCTCAACT TCTTCGCCGC GAACGGCCAC
GAGATCGTGC CGTCCTCGCC GCTCGTGCCG CGCAACGACC CGACCTTGAT GTTCACGAAC
GCCGGCATGG TGCAGTTCAA GAACGTCTTC ACCGGCGTCG AGAAGCGGCC GTACCACCGC
GCCACCACGT CGCAGAAATG CGTTCGTGCC GGCGGCAAGC ACAACGATCT CGACAATGTC
GGCTACACCG CCCGGCATCA CACCTTCTTC GAGATGCTCG GCAACTTCTC CTTCGGCGAC
TACTTCAAGG AGAACGCCAT CGAGCTCGCC TGGAAGCTCG TTACCAAGGA GTTCGGTCTC
CCCAAGGACA AGCTGACCGC GACCGTCTAT ATCGACGACG ACGAGGCGTT CGGCCTCTGG
AAGAAGATCG CGGGCCTCCC TGAGTCGCGT ATCATCCGCA TCGCGGGCTC GGACAATTTC
TGGCAGATGG GCGACACCGG CCCGTGCGGC CCGTGCTCGG AGATCTTCTA CGACCATGGC
GACAAGGTCT GGGGTGGCCC GCCTGGCTCG CCGGAGGCCG ATGGCGACCG CTTCATCGAG
ATCTGGAACC TCGTGTTCAT GCAATACGAG CAGCTCGAGG GCGGGGTCCG CAATCCCCTG
CCGAAGCCGT CGATCGACAC CGGTGCGGGC CTCGAGCGCG TCGCCGCGGT GCTGCAGGGC
AAGCACGACA ATTACGACAT CGACCTGTTC GTCGCCCTGA TCCGCGCCAT CGCCGACCTC
ACCAATGCCG ATCCGCAGGG CCCGCAGAAG GCGAGCCTGC GCGTCATCGC CGACCACCTG
CGCGCCTCGT CGTTCCTGAT CTCGGACGGC GTGCTGCCCT CCAATGAAGG CCGCGGCTAT
GTGCTGCGCC GGATCATGCG CCGCGCGATG CGCCACGCCC AGCTGCTCGG CGCCCGCGAG
CCGTTGATGC ACAAGCTGGT CGGCGCGCTG ACCCGCGAGA TGGGCCAGGC CTATCCGGAG
CTGATCCGCG CCGAGGCGCT GATCAAGGAG ACGCTGCGGC TCGAAGAGAC CCGCTTCCGC
AAGACCTTGG AGCGCGGCCT TGCGATCCTC GACGAGAAGT CGTCCACCCT GAAGAAGGGC
GACATGTTCG ACGGCGACGT CGCCTTCACC CTTTACGACA CCTATGGCTT CCCGCTCGAC
CTCACCCAGG ACGCGCTGAA ATCGCGCGGC ATCAGTGTCG ACCAGGCCTC CTTTACCGAC
GCGATGGAGC GTCAGCGCGC CAAGGCGCGC GCGGCCTGGG CCGGAAGCGG CGAGGCGGCG
ACCGAGAATG TCTGGTTCCC GCTGCGCGAG AAGCTCGGTG CGACCGAGTT CCTCGGCTAC
GAGACCGAGA CGGCGGAGGG CGCCGTCACC GCGCTGGTCA AGGACGGTGC CGAGGTCGAG
GGCCTCAAGG CCGGCGAGAG CGGCGCGATC GTGCTGAACC AGACGCCGTT CTATGGCGAG
TCCGGCGGCC AGGTCGGCGA CACCGGCGTG ATGAGCGGCG ACGGCGTTCG CGTTCGCATC
ACCGACACCC AGAAGAAGGC CGGCGACCTG TTCGTGCATA TCGGCACCGT GGAGCAGGGC
ACGCTCAAGC TCGGCGCCGC GCTGCAGCTC GAGGTCGATC ACGGCCGCCG CTCCGCGATC
CGCGCCAACC ATTCGGCGAC CCACATCCTG CACGAGGCGC TGCGCCAGGT GCTTGGTGAC
CACATCGCGC AGCGCGGCTC GCTGGTCTCG CCCGACCGGC TGCGCTTCGA CTTCGCCCAT
CCCAAGCCGA TCTCGGCGGA GGAACTCGCC CGCGTCGAGG ACATCGCCAA CGACGTCGTG
CTGGAGAATG CCGAGGTCAC GACCCGGTTG ATGGCGCTCG ACGATGCCCG CGAGGCCGGC
GCAAGGGCGC TGTTCGGCGA GAAATATGGC GACGAGGTTC GCGTCGTCTC GATGGGCAAC
GCCGCGCGCG ACCAGGCCTC CAATGCGCAA GCCTCCAATG CAATGGGCTG GTCGGTCGAG
CTGTGCGGCG GCACTCATGT CAAGCGCACC GGCGATATCG GCCTGATCGC GGTCACCTCG
GAGAGCGCGG TGTCATCCGG CGTTCGCCGC ATCGAGGCGC TGACGGCGCG CGGCGCCCGT
GCCCATGCCA ACCACAATCT CTCGCTCGCC AAGGCCGCCG CGGCCGAGCT GCGCACCACC
GTCGACGAGG TGCCGGCGCG CATCGCGGCG CTGATGGAGG AGCGCAAGAA GCTCGAGCGC
GAGCTGTCGG ATGCGCGCAA GAAGCTTGCG ATGGGCGGCG GCGCCGCGGC CGGCGGGTCC
GCTTCCGGCA TCCGTGAGGT CGCCGGCGTC AAGCTGATGG CCCGCGCCGT CGAGGGCGTC
GAGATGAAGG ATCTCAAGTC GCTGGTCGAC GAGGCCAAGA AGCAGCTCGG CTCCGGCGTC
GTGGCCATCG TCGGCCGCGC CGAGGACGGC AAGGCCGGCG TGGTCGTCGG TGTCACCGCC
GATCTCACCG CGCGCTTCAA CGCGGTCGAG CTGGTGCGCG CGGCATCGGA GGCGCTGGGC
GGCAAGGGCG GCGGTGGCCG TCCCGACATG GCCCAGGCCG GCGGTCCCGA TGGTTCCAAG
GCGGAGGCCG CGCTCGCCGC GATCGAGAGC GCGATCAGCA GGGCGGGCTG A
|
|---|
| Protein sequence | MSGVNEIRST FLNFFAANGH EIVPSSPLVP RNDPTLMFTN AGMVQFKNVF TGVEKRPYHR
ATTSQKCVRA GGKHNDLDNV GYTARHHTFF EMLGNFSFGD YFKENAIELA WKLVTKEFGL
PKDKLTATVY IDDDEAFGLW KKIAGLPESR IIRIAGSDNF WQMGDTGPCG PCSEIFYDHG
DKVWGGPPGS PEADGDRFIE IWNLVFMQYE QLEGGVRNPL PKPSIDTGAG LERVAAVLQG
KHDNYDIDLF VALIRAIADL TNADPQGPQK ASLRVIADHL RASSFLISDG VLPSNEGRGY
VLRRIMRRAM RHAQLLGARE PLMHKLVGAL TREMGQAYPE LIRAEALIKE TLRLEETRFR
KTLERGLAIL DEKSSTLKKG DMFDGDVAFT LYDTYGFPLD LTQDALKSRG ISVDQASFTD
AMERQRAKAR AAWAGSGEAA TENVWFPLRE KLGATEFLGY ETETAEGAVT ALVKDGAEVE
GLKAGESGAI VLNQTPFYGE SGGQVGDTGV MSGDGVRVRI TDTQKKAGDL FVHIGTVEQG
TLKLGAALQL EVDHGRRSAI RANHSATHIL HEALRQVLGD HIAQRGSLVS PDRLRFDFAH
PKPISAEELA RVEDIANDVV LENAEVTTRL MALDDAREAG ARALFGEKYG DEVRVVSMGN
AARDQASNAQ ASNAMGWSVE LCGGTHVKRT GDIGLIAVTS ESAVSSGVRR IEALTARGAR
AHANHNLSLA KAAAAELRTT VDEVPARIAA LMEERKKLER ELSDARKKLA MGGGAAAGGS
ASGIREVAGV KLMARAVEGV EMKDLKSLVD EAKKQLGSGV VAIVGRAEDG KAGVVVGVTA
DLTARFNAVE LVRAASEALG GKGGGGRPDM AQAGGPDGSK AEAALAAIES AISRAG
|
|---|
| |