Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BBta_5436 |
Symbol | |
ID | 5150518 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Bradyrhizobium sp. BTAi1 |
Kingdom | Bacteria |
Replicon accession | NC_009485 |
Strand | - |
Start bp | 5656636 |
End bp | 5657976 |
Gene Length | 1341 bp |
Protein Length | 446 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640560188 |
Product | carbohydrate-selective porin, OprB family |
Protein accession | YP_001241312 |
Protein GI | 148256727 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3659] Carbohydrate-selective porin |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.390026 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 0.345232 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATGGGT TTGTGACGAC CGCACGCATG TGCGGCGTGG GTGTTGCTTT GTCTCTGGTG GGGTGTGGGG CGTATGCGGC GGATATGCCG ACCAAGGCGC CGATTCCCTA TGCCGGTGTC GATGATTTCT GGACGCGGCC ATATCTGTTC GGCGATCTCG GCCGGACCAA ATTGAAGGAG CAGGGCATCT CGCTCGCGCT CACGCTCGGC GACGAAGCCG TCACCAATCT CTCCGGCGGC TCGCGCAACA CTTCGGCCAA TGCCGGGCAG TTGTGGTTCC AGGCCAAGTT CGACATGGCC AAGCTCGCCG GAATCCCCGG CGGCACGATC GGCATCACGC TGGTCGATCG CTTCGGCAAG AACCTCAACA GCGAGGCCGG CATCCCGGCG CTGCAACTGA CCAACGAGGT GTTCGGCCGC GGCAACATCC TGCGCCTGAC CGAGTTCTAC TACTCGCAGA AGCTGCTCGG CGACCGCCTC GAACTGAAGG GCGGCCGGCT GCCGGTCGGC TCCGACTTCT TCTTCGGCCA GTGCGAGTTC ATCAACCTGA CCTTCTGCGG CGGCCAGCCC GGCAACATCC AGGGCGGCTA CATCTACAAC TGGCCGGTCA GCCAATGGGC CGGCGTCGTG CACTACAATT TCACCAAGGA GTGGAAGCTG TCGGTCGGCG TCTACGACGC CAATCCGAAC TATCTCACGA CGTCGGATGC GGGCGTCTAT TTGGCGCCGG GCATTCCGCG CTCGAACCCG GCCGCGGGCG TGCTGGTGCC GGTCGAAGTG GTGTGGGAAC CGAGCGGTCC GCTGAACGGC ACCTGGCGCT TCGGCGGCTG GTATGACAGC GCCTCGTCGA TCGACGGTGG CCTGCCCGGC ATCATCGGCG TTGTCCGCGG CGGCCCCGGC GTCGGCGACC AGAACCTCAG CAGCCAGCGC GGCCGCTACG GCTTCTACGA ATCGATCCTG CAGCGCCTGA CGGTCGACGG TCCCAAGGCT CAGGGCTGGT ACACCTTCCT CAACACCAGC GTCGCCGATC ACCGCACCTC GTATCAGGAC TACCAGATCG CCTGGGGCAT CAAGCACACC GGCACCTTCT CGTTCCGTCC CGAGGACGAG GTCGGCTTCG CGGTGGGCAC GACACACGTC AATTCCGCGG CGCTGACGCC GAATGCCGGC GGCAACGAGA TCCCGCTCGA AGCCTGGTAC GGCTGGCAGG CGACCGGTTG GATGAACATC AAGTTCGACG CGCAATATGT CATCAATCCC GGCGGCCGCG GCTTCAACGG CGCCGGCGTG AAAACCAACA ATGCCGTGGT GCTCGGCCTG CGCACCGTGG TCCACTTCTG A
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Protein sequence | MNGFVTTARM CGVGVALSLV GCGAYAADMP TKAPIPYAGV DDFWTRPYLF GDLGRTKLKE QGISLALTLG DEAVTNLSGG SRNTSANAGQ LWFQAKFDMA KLAGIPGGTI GITLVDRFGK NLNSEAGIPA LQLTNEVFGR GNILRLTEFY YSQKLLGDRL ELKGGRLPVG SDFFFGQCEF INLTFCGGQP GNIQGGYIYN WPVSQWAGVV HYNFTKEWKL SVGVYDANPN YLTTSDAGVY LAPGIPRSNP AAGVLVPVEV VWEPSGPLNG TWRFGGWYDS ASSIDGGLPG IIGVVRGGPG VGDQNLSSQR GRYGFYESIL QRLTVDGPKA QGWYTFLNTS VADHRTSYQD YQIAWGIKHT GTFSFRPEDE VGFAVGTTHV NSAALTPNAG GNEIPLEAWY GWQATGWMNI KFDAQYVINP GGRGFNGAGV KTNNAVVLGL RTVVHF
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