| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_5422 |
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| Symbol | |
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| ID | 5150535 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bradyrhizobium sp. BTAi1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009485 |
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| Strand | - |
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| Start bp | 5640358 |
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| End bp | 5641779 |
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| Gene Length | 1422 bp |
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| Protein Length | 473 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 640560176 |
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| Product | HlyD family secretion protein |
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| Protein accession | YP_001241300 |
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| Protein GI | 148256715 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.970488 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.165566 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCACAC CTGCAAGCCT TCTGCGAAGC CTGTCGTTCG GCGGCGGCAA CGTGTCGGAA
CGCGAATTCC TTCCCGCGGC CCTCGAAATC ACGGAGACGC CGCCCAATCC GCTCGGACGC
ATCACGGCGC TGGCGCTGTG CACCGTGACC TTTGCGGCGC TCGGCTGGGC GTTCCTCGGC
AAGGTCGATA TCGTCGCGGT CGCCAGCGGC AAGGTGATCT CTCACACCCG GACGCAGGTG
GTGCAACCGT TCGAGACCGC AAGCGTCAAG GCGGTGCTGG TGCAGCCGGG GCAGCGCGTG
CGCGCCGGCG ACGCGCTGAT CGAGCTCGAC AAGACGTCGG TGAGCGCCGA GGCCGATCGC
GCCCGCAGCG ACCTGATCGC GAGCCTGCTC GACGAGGTAC GGCTGGCGGC GTTCCTCGAC
GGCGTGAAGA TCGGGCCATT CGACCTCGTG GTCGGCGTCG ATCCGCTCGA CCGCGCCCGC
GCCCAGGCCC AGCTCACGGC GCAGCTGGCA ATGCGCGCCA GCCAGTTGGC GGCGCTCGCG
CAGGAGCGCG CCCAGCACAT CGCCGAGCGC GAGGCGCTGC AGCAGACGGT TGCCAAATAT
GAGCAGACCC TGCCGATGGT CGCCGAGCGC GCCGAGATCC GCACCAAGGC GAGCGAGATC
GGCAATGCCT CGATCATCGC CCGGCTGGAA AGCCAGCAAT TGCTGGCCGA GACCCGCGCC
GAGCTCGCGA TCAACAAGGC CAAGATCATC GCGCTCGACG CCACGATCGC CGGGCTCGAT
CAGAAGATCG CCGCGACCGA GGCCGAGATC CGCGACAAGG CGATGCGCGA CCTCGCCACC
GCGCGCGAGC GCGCCCGCGC CGCCGGCGAG GCCTTGACCA AGGCGACGCG CCGCGCCGAG
CTGCAGACCC TGCGCGCGCC GATCGACGGC ACCGTGCAGC AGATGCACGG CGCCGCCGCG
GGCGCCGTGG TGACGCCGGC GCAGCAGCTG CTGTCGGTCG TTCCCGACGA CGACAGGATC
GAGGTCGAGG CGGTGGTCGA GAACCGCGAT GTCGGCTTCG TCGAGGCCGG CCAGCGCGTC
GAGCTCAAGG TCGACGCCTT TCCGTTCACC CGTTATGGCC TGCTCGGCGG CCAGGTGACC
TCGGTCGATC GCGACGCCGA GGCCGCGCCG GTCAATCCCA ATGGCGTCCA GGGCGCCGAG
CGCCAGGCCG ACCAGACCGA CCGCGTCGAA GCCAGCGAGC GGCTGCGCTA CATGGTGCAT
ATCGCGCTCG ACCGCAGCAC GCTGGACGTC GATGGCCGCA CGGCGGCGCT GGTGCCGGGC
ATGTCGGTGA AGGCCGAGAT CCTGACCGGC AAAAGGCGCA TCATCGATTT CCTGCTGGCG
CCGTTGCGGG AGCACCTCCA CGACGCGATG CGCGAGCGCT GA
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| Protein sequence | MSTPASLLRS LSFGGGNVSE REFLPAALEI TETPPNPLGR ITALALCTVT FAALGWAFLG
KVDIVAVASG KVISHTRTQV VQPFETASVK AVLVQPGQRV RAGDALIELD KTSVSAEADR
ARSDLIASLL DEVRLAAFLD GVKIGPFDLV VGVDPLDRAR AQAQLTAQLA MRASQLAALA
QERAQHIAER EALQQTVAKY EQTLPMVAER AEIRTKASEI GNASIIARLE SQQLLAETRA
ELAINKAKII ALDATIAGLD QKIAATEAEI RDKAMRDLAT ARERARAAGE ALTKATRRAE
LQTLRAPIDG TVQQMHGAAA GAVVTPAQQL LSVVPDDDRI EVEAVVENRD VGFVEAGQRV
ELKVDAFPFT RYGLLGGQVT SVDRDAEAAP VNPNGVQGAE RQADQTDRVE ASERLRYMVH
IALDRSTLDV DGRTAALVPG MSVKAEILTG KRRIIDFLLA PLREHLHDAM RER
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