Gene BBta_5327 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBBta_5327 
SymbollivK 
ID5155352 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBradyrhizobium sp. BTAi1 
KingdomBacteria 
Replicon accessionNC_009485 
Strand
Start bp5554870 
End bp5555988 
Gene Length1119 bp 
Protein Length372 aa 
Translation table11 
GC content64% 
IMG OID640560089 
Producthigh-affinity branched-chain amino acid ABC transporter (substrate-binding protein) 
Protein accessionYP_001241213 
Protein GI148256628 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.25236 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACCAC TCAAACTCAT TGGTCTGGCG CTGGGCGCGT CGCTTGCGCT CTCGACCGCC 
GCCTACGCCG AAGACATCAC CATCGCCGTG GCCGGCCCGA TGACCGGCGG CGAGTCGGCC
TTCGGCCGCC AGATGCAGAA CGGCGCCGAG ATGGCGATCG CCGATCTCAA TGCTGCAGGC
GGCGTGCTCG GCAAGAAGCT CGCTTTGCAG GTGGGTGACG ACGCCTGCGA TCCGAAGCAG
GCCCGCTCGG TCGCCGAGAA GCTCGCCGGC TCCGGCATTC CGTTCGTCGC CGGCCATTTC
TGCTCGTCGT CGTCGATCCC GGCCTCCGAG GCCTATGCCG ACAGCAACGT GCTGCAGATC
ACCCCGGCTT CGACCAACCC GCTGTTCACC GAGCGCAAGC TGTGGAACGT GGCGCGCGTC
TGCGGCCGTG ACGATCAGCA GGGCCTCGTC GCCGCCAACT ACATCGCGAA GAACTTCAAG
GGCAAGAACA TCGCGATCCT CAACGACAAG ACCACCTACG GCAAGGGTCT CGCCGACGAG
ACCAAGAAGG CGCTCAACAA GGCCGGCGTC ACCGAGAAGA TGTTCGAGTC GTACAACAAG
GGCGACAAGG ACTTCAACGC GATCGTGTCG CGCCTGAAGC GTGAGAACAT CGACCTCGTC
TATGTCGGCG GCTATCATCA GGAAGCCGGC TTGATCCTGC GCCAGATGCG CGATCAGGGC
CTCAAGACCA TCCTGATGGC GGGCGATGCG ATGAACGACA AGGAATTCGC GTCGATCACC
GGCCCGGCCG CCGAAGGCAC GCTGTTCACC TTCGGCCCCG AGCCGCGCAA CAAGCCGACC
GCGAAGGCGA TCGTCGACAA GTTCAAGGCC AAGAACATCG ACCCCGAGGG CTACACGCTC
TACACCTACG CCGCCATCCA GGTCTGGTCG CAGGCCGTGA AGAAGGCCAA CACCACCGAC
GCCAAGAAGG TGATGGACAC CATCAAGGCC GGCGAGTGGG ACACGGTTCT CGGCAAGCTC
GGCTTCGACG CCAAGGGCGA CATCAAGCAG ATCGACTACG TCGTCTACAA GTGGGACGCC
AAGGGCGGCT ACGCCGAGCT CGGCAGCAAG GGCTCCTGA
 
Protein sequence
MKPLKLIGLA LGASLALSTA AYAEDITIAV AGPMTGGESA FGRQMQNGAE MAIADLNAAG 
GVLGKKLALQ VGDDACDPKQ ARSVAEKLAG SGIPFVAGHF CSSSSIPASE AYADSNVLQI
TPASTNPLFT ERKLWNVARV CGRDDQQGLV AANYIAKNFK GKNIAILNDK TTYGKGLADE
TKKALNKAGV TEKMFESYNK GDKDFNAIVS RLKRENIDLV YVGGYHQEAG LILRQMRDQG
LKTILMAGDA MNDKEFASIT GPAAEGTLFT FGPEPRNKPT AKAIVDKFKA KNIDPEGYTL
YTYAAIQVWS QAVKKANTTD AKKVMDTIKA GEWDTVLGKL GFDAKGDIKQ IDYVVYKWDA
KGGYAELGSK GS