Gene BBta_5200 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBBta_5200 
Symbol 
ID5155002 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBradyrhizobium sp. BTAi1 
KingdomBacteria 
Replicon accessionNC_009485 
Strand
Start bp5427570 
End bp5428286 
Gene Length717 bp 
Protein Length238 aa 
Translation table11 
GC content63% 
IMG OID640559973 
Productputative ABC transporter, ATP binding component 
Protein accessionYP_001241098 
Protein GI148256513 
COG category[V] Defense mechanisms 
COG ID[COG1136] ABC-type antimicrobial peptide transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0864003 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.0646011 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGATAGAGC GGCCTATACT TGCCGTCTTC GGCGTCTCGA AGACCTATCC GAGCAGGCAT 
GGTGCGCTGC CGGTTCTTCA GGACGTCTCT CTGGTGGTCT GCCGATCTGA ATTGTGCGCG
ATCAAGGGGG CGTCCGGCTC CGGCAAGAGC ACCTTGATGA GCCTGATCGG GTTGCTGGAT
CGACCGGACG CGGGTCGGAT CGAAATTACC GGCCTCAGGG TGGACCGCCT CGGTGCGGAC
GAGCAGGCCA GGCTGCGCAA TCGGCTGATT GGCTTCGTCT TCCAATCGTT CAATTTGCTC
CCGGGGCTTT CGGCGCTTGA AAATGTCGCG CTCCCCCTGC TGTACCGCGG CGTGTCACGA
CCTGCGCGCC GGGACATTGC GAGATCCGCT CTGGCGCGGG TGGGTCTCCA AGACCGGATC
GACCACCGCC CGAACCAGAT GTCTGGAGGG CAGTGCCAGC GCGTCGCCAT CGCGCGCGCG
TTGGCAGGGC AACCGGCCGT CATTTTGGCC GATGAGCCGA CCGGGAGCCT CGATACAGCG
ACATCCGAGA GCATCATGAA TCTGTTTCTC GATCTCAACA GGAATCACGG GACCACGATC
ATTCTGGTGA CGCACGATCC GACGGTGGCC GCGCGCTGTC CGCGTCGAAT CGTCGTGAGT
GACGGTCGCG TCGTCGACGA CAATCGCGAT GAGCTGCGCG ATGCAGGACC CTGTTGA
 
Protein sequence
MIERPILAVF GVSKTYPSRH GALPVLQDVS LVVCRSELCA IKGASGSGKS TLMSLIGLLD 
RPDAGRIEIT GLRVDRLGAD EQARLRNRLI GFVFQSFNLL PGLSALENVA LPLLYRGVSR
PARRDIARSA LARVGLQDRI DHRPNQMSGG QCQRVAIARA LAGQPAVILA DEPTGSLDTA
TSESIMNLFL DLNRNHGTTI ILVTHDPTVA ARCPRRIVVS DGRVVDDNRD ELRDAGPC