| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_5136 |
|---|
| Symbol | |
|---|
| ID | 5153451 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | - |
|---|
| Start bp | 5367712 |
|---|
| End bp | 5368578 |
|---|
| Gene Length | 867 bp |
|---|
| Protein Length | 288 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640559912 |
|---|
| Product | putative peptide ABC transporter permease protein, oppC-like protein |
|---|
| Protein accession | YP_001241039 |
|---|
| Protein GI | 148256454 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.0406235 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGCTGA TCTCCGACAT CGCTGCGCCA CGGACGCTGC TGCGCCTCGA TACGCTGCGG
CGGCTGCCAT TCGCGCTGCG TTCAGGTCTC GTCATTCTCA CCGCCGAGGT CGTGATCGCC
GTCCTGGCCA ATTGGCTCTA TCCCGGCGAT CCGTTCGATC TTGCTGGTGC GCCGTTCCTT
GCGCCGGGCG ACGATCCGCA GTTTCCGCTG GGCACCGACA TTCTCGGGCG CGACATTGCG
GCGGGGCTGG TGCACGGGGC GCGGATCTCG CTGATCGTCG GCTTTTCCGC CACGGCGCTG
GCGGTGACGG TCGGGACGAC CGTCGGGCTG CTGTCCGGCT ATCTCGGCGG CTGGGTGGAT
CATGTCCTGA TGCGCGTGAC GGAGCTCTTC CAGGTGATCC CGCATTTTCT GCTCGCGATC
ATCCTGGTCG CGATCCTCGG GGCGCGGATC GAATTCATCG TTCTGGCGAT CGGCCTGACG
AGCTGGTCGA TGGTGGCGCG GCTGGTGCGG GCGGAGACGC TGGCGCTTCG CGAACTCGAC
TATGTCCGCA TCTGCGTGGC GATGGGCGGC GGCCCGGTGC GCGTGATGCT CACGCATATT
TTGCCCAACG TGCTGCCGCC GATCATCGTG GCGGCCTCCA TCCTCACGGC GCTCGCTGTG
CTGACCGAGG CCGGACTTGC GTTCTTCGGT CTCAGCGACA GCAATCACAT CAGTTGGGGA
GGGATGATCG GCGCGTCGCG CGACGCGCTG CTGACGGCAC CCTATATGAC ACTGATTCCG
GGGCTCGCCA TCGTCGTGAC CGTCATGGCG CTCAGCCTGA TCGGCGACGG CTTGACCGCG
TTGCTGCGCC GCGGAGACGG CGCGTGA
|
|---|
| Protein sequence | MTLISDIAAP RTLLRLDTLR RLPFALRSGL VILTAEVVIA VLANWLYPGD PFDLAGAPFL
APGDDPQFPL GTDILGRDIA AGLVHGARIS LIVGFSATAL AVTVGTTVGL LSGYLGGWVD
HVLMRVTELF QVIPHFLLAI ILVAILGARI EFIVLAIGLT SWSMVARLVR AETLALRELD
YVRICVAMGG GPVRVMLTHI LPNVLPPIIV AASILTALAV LTEAGLAFFG LSDSNHISWG
GMIGASRDAL LTAPYMTLIP GLAIVVTVMA LSLIGDGLTA LLRRGDGA
|
|---|
| |