Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BBta_5086 |
Symbol | rplA |
ID | 5152172 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Bradyrhizobium sp. BTAi1 |
Kingdom | Bacteria |
Replicon accession | NC_009485 |
Strand | - |
Start bp | 5311951 |
End bp | 5312643 |
Gene Length | 693 bp |
Protein Length | 230 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640559862 |
Product | 50S ribosomal protein L1 |
Protein accession | YP_001240991 |
Protein GI | 148256406 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0081] Ribosomal protein L1 |
TIGRFAM ID | [TIGR01169] ribosomal protein L1, bacterial/chloroplast |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00155922 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 0.872957 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCGATCG GAAAGCGTTT GAAGAAGGCC CGCGAGGGCA TCGACCGCAC CAAGCTGTAT CCGCTTGCTG ACGCGATCAA GATGATCAAA GAGCGCGCGG TGTCGAAGTT CGACGAGACC ATCGAGGTCG CGATCAATCT CGGCGTCGAT CCGCGTCACG CCGACCAGAT GGTCCGTGGC GTCGTGATGC TGCCGAACGG CACCGGCCGT ACGCTCCGCG TCGGCGTGTT CGCCCGCGGC GCGAAGGCCG AGGAAGCCAA GGCCGCTGGT GCCGACGTGG TCGGCGCTGA GGACCTGGTC GAGAAGGTGC AGAACGGCAA TATCGATTTC GACCGCTGCA TCGCCACCCC CGATATGATG CCGCTGGTCG GCCGTCTCGG TAAGGTGCTC GGTCCGCGCG GCATGATGCC GAACCCGAAG ATCGGTACCG TGACGATGGA CGTCGCCGGC GCCGTCAAGG GGGCCAAGGG CGGTTCGGTC GAGTTCCGCG TCGAGAAGGC CGGCATCATC CAGGCCGGCG TCGGCAAGGC CTCGTTCGCC GAGGACAAGC TGGTCGAGAA CATCAAGGCG CTGGCGGACG CGGTCGTGAA GGCCAAGCCG GCAGGCGCCA AGGGCACCTA TGTCCAGCGC GTCGCCGTGT CGTCGACGAT GGGCCCGGGC GTCAAGGTCG AGCCGGGCAC CGTGCTGGCG TAA
|
Protein sequence | MAIGKRLKKA REGIDRTKLY PLADAIKMIK ERAVSKFDET IEVAINLGVD PRHADQMVRG VVMLPNGTGR TLRVGVFARG AKAEEAKAAG ADVVGAEDLV EKVQNGNIDF DRCIATPDMM PLVGRLGKVL GPRGMMPNPK IGTVTMDVAG AVKGAKGGSV EFRVEKAGII QAGVGKASFA EDKLVENIKA LADAVVKAKP AGAKGTYVQR VAVSSTMGPG VKVEPGTVLA
|
| |