| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_5080 |
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| Symbol | rpoC |
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| ID | 5151370 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bradyrhizobium sp. BTAi1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009485 |
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| Strand | - |
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| Start bp | 5300306 |
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| End bp | 5304505 |
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| Gene Length | 4200 bp |
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| Protein Length | 1399 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640559857 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_001240986 |
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| Protein GI | 148256401 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.551229 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.0734201 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCAAG AAATTATGAA TCTCTTCAAT CCGACGACCC CGGCTCAGGT CTTCGACCAG
ATCCGGATCT CGATCGCGAG CCCTGAGAAG ATTCTGTCCT GGTCCTACGG CGAGATCAAG
AAGCCGGAAA CGATCAACTA CCGGACCTTC AAGCCCGAGC GCGACGGCCT GTTCTGCGCC
CGCATCTTCG GGCCAATCAA GGACTATGAG TGCTTGTGCG GCAAGTACAA GCGGATGAAG
TACAAGGGCA TCATCTGCGA GAAGTGCTCG GTCGAGGTGA CCCTGTCGCG CGTCCGGCGC
GAGCGCATGG GCCATATCGA GCTCGCCGCC CCCGTCGCGC ACATCTGGTT CCTGAAGTCG
CTGCCGTCGC GCATCGGCCT GCTGCTCGAC ATGACGCTGA AGGATCTCGA GCGGATCCTG
TATTTCGAAT ATTACGTCGT CCTCGAGCCG GGTCTCACCG CGCTCAAGGA CCGTCAGCTC
CTGTCCGAGG ACGAGTACCT CAAGGCGCAG GACGAGTATG GCCAGGACAG CTTCACCGCC
ATGATCGGCG CGGAAGCCAT CCGTGAGCTG CTGCGCGGCC TCGAGCTGGA GAAGCTCGAG
CAGACGCTGC GTGCCGAAAT GCAGGAGACC GACTCCGACA TCAAGCACAA GAAGCTCGCC
AAGCGCCTGA AGATCGTCGA GGCGTTCCGC CACTCCGGCA ACAAGCCGGA ATGGATGATC
ATGACCGTCG TGCCGGTGAT CCCGCCGGAT CTGCGGCCGC TGGTGCCGCT CGACGGTGGC
CGCTTCGCGA CCTCCGACCT CAACGACCTC TACCGCCGCG TCATCAACCG CAACAACCGC
CTGAAGCGGC TGATGGAGCT GCGCGCGCCC GACATCATCA TCCGCAACGA GAAGCGCATG
CTTCAGGAAG CGGTGGATGC GCTGTTCGAC AACGGCCGCC GCGGCCGCGT CATCACCGGC
GCCAACAAGC GTCCGTTGAA GTCGCTCGCC GACATGCTCA AGGGCAAGCA GGGCCGCTTC
CGTCAGAACC TGCTCGGCAA GCGCGTCGAC TATTCGGGTC GTTCGGTCAT CGTGGTCGGT
CCGGAACTGC GCCTGCACCA GTGCGGCCTG CCGAAGAAGA TGGCGCTCGA GCTGTTCAAG
CCGTTCATCT ATTCGCGGCT CGACGCCAAG GGTCTGTCGA CCACGGTCAA GCAGGCCAAG
AAGCTGGTCG AGAAGGAGCG TCCGGAGGTC TGGGACATCC TGGACGAGGT CATCCGCGAG
CATCCGGTGC TGCTGAACCG CGCCCCGACC CTGCATCGTC TCGGCATTCA GGCGTTCGAG
CCGGTGCTGA TCGAGGGCAA AGCGATCCAG CTGCATCCGC TGGTCTGCTC GGCGTTCAAC
GCCGACTTCG ACGGCGACCA GATGGCCGTG CACGTCCCGC TGTCGCTCGA AGCGCAGCTG
GAAGCGCGCG TCCTGATGAT GTCGACCAAC AACATCCTGC ATCCGGCCAA TGGTCAGCCG
ATCATCGTGC CGTCGCAGGA CATCGTGCTC GGCCTGTATT ATCTCTCGAT CATGCGCGAG
GGCATGAACG GCCAGGGCAT GACGTTCGGC AACATGGCCG AGCTCGAGCA CGCGCTGCAT
GCCAAGGCGA TCCATCTCCA CAGCAAGATC AAGTACCGCT GGGAGGGCAT GGACGAGACC
GGCAAGATCT CCAAGCGCTG GATCGAGACC ACCGCCGGCC GCGTCATGCT CGGCAACGTG
CTGCCGCGTC ATCCGCGCAT TTCGTACGAG ATCATCAACA AGCTGATGAC CAAGCGCGAA
ATCTCCGGCG TGATCGACCA GGTCTACCGT CACTGCGGCC AGAAGGAGAC GGTGATCTTC
TGCGACCGCA TCATGGCGCT CGGCTTCTAC AACGCCTTCA AGGCGGGCAT CTCGTTCGGC
AAGGACGACA TGGTCGTGCC GGCGGGCAAG TGGAAGATCG TCGACACCAC CCGTACGCTG
GCGAAGGATT TCGAGCAGCA GTACAATGAC GGTCTGATCA CCCATGGCGA GAAGTACAAC
AAGGTCGTCG ACGCCTGGTC GAAGGCCTCG GAAGAGATCG CCAAGGAGAT GATGAAGGAG
ATCTCCGTCA CCAAGAAGAC GGCGACGGGA GCAGATGCCG ACATCAACTC GATCTACATG
ATGTCGCATT CCGGTGCCCG CGGTTCGCCG GCCCAGATGC GTCAGCTCGC CGGCATGCGC
GGCCTGATGG CCAAGCCGTC GGGTGAGATC ATCGAGACGC CGATCATCTC GAACTTCAAG
GAAGGTCTCT CGGTTCTCGA GTACTTCAAC TCGACCCACG GCGCCCGCAA GGGCCTCGCG
GACACCGCGT TGAAGACCGC GAACTCGGGT TACCTGACCC GTCGTCTGGT CGACGTCGCG
CAGGACTGCA TCATCACGCA GGACGATTGC GGCACCCATC TCGGCATCAA GATGCGCGCC
ATCGTCGATG CCGGTACGGT GGTGGCATCG CTCGGATCGC GCATCCTGGG CCGCGTGCCC
TGCGACGACG TGCGCGATCC CGCGACCAAT GCGGTGCTGG TCAAGGCCGG CACGCTGATG
GAGGAGAGCC ACATCGACGC CATCCAGCAG GCTGGCGTGC AGGAGGTGAA GATCCGCTCG
GCGCTGACCT GCGAGCTGGT CAACGGCATC TGCAAGATGT GCTACGGCCG CGACCTCGCG
CGCGGTACGC CGGTCAACCA TGGTGAGGCT GTCGGCGTCA TCGCCGCGCA GTCGATCGGT
GAGCCCGGCA CCCAGTTGAC GATGCGCACC TTCCACATCG GCGGCGCAGC GCAGCTGAAC
GAGCAGTCCT TCGTCGAGTC GAACTTCGAA GGCAGGGTGG TCATCAAGAA CAAGGCGATC
GCCCGCAACA GCGAGGGTCA CCTGATCGCG ATGGTCCGCA ACATGGTCGT GACCATCGTC
GACCCCGACG GTTCGGAACG TGCGACGCAC CGCATCCAGT ACGGTGCGCG CATGCATGTC
GACGACGGCG ACATGATCAA GCGCGGCCAG CGTATCGCCG AGTGGGATCC GTATACCCGT
CCGATCCTCA CCGAGGCGGA GGGAACGATC GGGTTCGAGG ATCTGACCGA AGGTCTGTCG
ATCTCCGAAA CGCTCGACGA GTCCACGGGT ATCGCCAAGC GCGTGGTCAT CGACTGGCGT
GGAACGCGCG GTGGCGCGGA TCTGCGTCCG GCGATCGTGA TCAAGGGCAA GGATGGCAAG
GTGCTCAAGC TCGCCCGCGG TGGCGATGCC CGCTACATGC TGTCGGTCGA CGCGATTCTG
TCGGTCGACG TCGGAACGAC GGTGAAGCCG GGTGACATCC TGGCGCGTAT CTCCACCGAG
AGCGCCAAGA CGCGCGACAT CACCGGCGGT CTGCCGCGGG TGGCGGAGCT GTTCGAAGCG
CGCAAGCCGA AGGATGCCGC GATCATCGCT GAGATCGCCG GCACCATCCG GTTCGGGCGG
GATTACAAGA ACAAGCGTCG CATCTCGATC GAGCCGGTCG ACAAGACCGA GGAGCCGCGT
GAGTACCTGA TCCCGAAGGG CAAGCACATC CATCTGCAGG ATGGCGACAT CGTCGAGAAG
GGGGACTTCA TCGTCGAAGG CAACCCGGCG CCGCACGACA TCCTGGCGAT CAAGGGCATC
GAGGAACTCG CGGCCTATCT GGTCAACGAG ATCCAGGAGG TCTACCGGCT GCAGGGCGTG
CTCATCAACG ACAAGCACAT CGAGGTGATT GTCCGTCAGA TGCTGCAGAA GATCGAGGTC
ACCGATCAGG GCGACACCGA CATGATCGCC GGCGAGCAGG TCGACAAGAT CGAGTTCGAC
GCGCTGAACG CGAAGGCCGT GGAGGAGGGC AAGAAGCCCG CCACCGGCAA TCCGGTTCTG
CTCGGCATCA CCAAGGCGAG CCTGCAGACC CGGTCGTTCT TCTCGGCGGC CTCGTTCCAG
GAGACCACCC GCGTCCTCAC CGAGGCGGCG GTCAATGGCA AGATCGACCC GCTTGAGGGT
CTCAAGGAGA ACGTCATCGT CGGCCGCCTG ATTCCGGCCG GCACCGGCGC CTCCATGGCC
CGCATCCGCG AGGTTGCGCT GAAGCGCGAC AAGCTGATTC TCGACGAGCG CGAGAAGCAG
GCGGCGATCG TGCCGTCGCA GCCCGAGCCG CAGCCGCTGG CGCTGCCGCC GGCGGAGTAA
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| Protein sequence | MNQEIMNLFN PTTPAQVFDQ IRISIASPEK ILSWSYGEIK KPETINYRTF KPERDGLFCA
RIFGPIKDYE CLCGKYKRMK YKGIICEKCS VEVTLSRVRR ERMGHIELAA PVAHIWFLKS
LPSRIGLLLD MTLKDLERIL YFEYYVVLEP GLTALKDRQL LSEDEYLKAQ DEYGQDSFTA
MIGAEAIREL LRGLELEKLE QTLRAEMQET DSDIKHKKLA KRLKIVEAFR HSGNKPEWMI
MTVVPVIPPD LRPLVPLDGG RFATSDLNDL YRRVINRNNR LKRLMELRAP DIIIRNEKRM
LQEAVDALFD NGRRGRVITG ANKRPLKSLA DMLKGKQGRF RQNLLGKRVD YSGRSVIVVG
PELRLHQCGL PKKMALELFK PFIYSRLDAK GLSTTVKQAK KLVEKERPEV WDILDEVIRE
HPVLLNRAPT LHRLGIQAFE PVLIEGKAIQ LHPLVCSAFN ADFDGDQMAV HVPLSLEAQL
EARVLMMSTN NILHPANGQP IIVPSQDIVL GLYYLSIMRE GMNGQGMTFG NMAELEHALH
AKAIHLHSKI KYRWEGMDET GKISKRWIET TAGRVMLGNV LPRHPRISYE IINKLMTKRE
ISGVIDQVYR HCGQKETVIF CDRIMALGFY NAFKAGISFG KDDMVVPAGK WKIVDTTRTL
AKDFEQQYND GLITHGEKYN KVVDAWSKAS EEIAKEMMKE ISVTKKTATG ADADINSIYM
MSHSGARGSP AQMRQLAGMR GLMAKPSGEI IETPIISNFK EGLSVLEYFN STHGARKGLA
DTALKTANSG YLTRRLVDVA QDCIITQDDC GTHLGIKMRA IVDAGTVVAS LGSRILGRVP
CDDVRDPATN AVLVKAGTLM EESHIDAIQQ AGVQEVKIRS ALTCELVNGI CKMCYGRDLA
RGTPVNHGEA VGVIAAQSIG EPGTQLTMRT FHIGGAAQLN EQSFVESNFE GRVVIKNKAI
ARNSEGHLIA MVRNMVVTIV DPDGSERATH RIQYGARMHV DDGDMIKRGQ RIAEWDPYTR
PILTEAEGTI GFEDLTEGLS ISETLDESTG IAKRVVIDWR GTRGGADLRP AIVIKGKDGK
VLKLARGGDA RYMLSVDAIL SVDVGTTVKP GDILARISTE SAKTRDITGG LPRVAELFEA
RKPKDAAIIA EIAGTIRFGR DYKNKRRISI EPVDKTEEPR EYLIPKGKHI HLQDGDIVEK
GDFIVEGNPA PHDILAIKGI EELAAYLVNE IQEVYRLQGV LINDKHIEVI VRQMLQKIEV
TDQGDTDMIA GEQVDKIEFD ALNAKAVEEG KKPATGNPVL LGITKASLQT RSFFSAASFQ
ETTRVLTEAA VNGKIDPLEG LKENVIVGRL IPAGTGASMA RIREVALKRD KLILDEREKQ
AAIVPSQPEP QPLALPPAE
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