| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_5055 |
|---|
| Symbol | rplF |
|---|
| ID | 5150473 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | - |
|---|
| Start bp | 5281619 |
|---|
| End bp | 5282152 |
|---|
| Gene Length | 534 bp |
|---|
| Protein Length | 177 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640559833 |
|---|
| Product | 50S ribosomal protein L6 |
|---|
| Protein accession | YP_001240962 |
|---|
| Protein GI | 148256377 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0097] Ribosomal protein L6P/L9E |
|---|
| TIGRFAM ID | [TIGR03654] ribosomal protein L6, bacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.468069 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCACGTA TTGGCAAGAA GCCTGTGACG GTGCCGTCCG GTGTGACCGC AACCGTCGAC
GGCCAGACCG TCAAGATGAA GGGGCCGAAG GGGCAGCTTC AGTTTATCGT CCATGACGAC
GTGGACGTGA AGTTCGAGAA CGGCCAGGTC AGGGTTGCCC CGCGCAGCGA GACCAAGCGC
GCCCGGTCGC TGTACGGCAC CGCGCGCGCC CAGATCGCGA ATCTGGTTGA AGGCGTCACC
AAGGGCTTCG AGAAGAAGCT CGAGATCACC GGCGTCGGCT ACCGCGCCGC GATGCAGGGC
AAGAACCTGC AGCTCGCGCT CGGCTACAGC CACGACGTCG TCTACCAGAT CCCGGAAGGC
ATCACGATCG CCGTGCCGAA GCCGACCGAG ATCACCGTCA CGGGCATCGA CCCGCAGCGC
GTCGGCCAGG TGGCCGCCGA GATCCGCGCC TACCGGCCGC CGGAGCCCTA TAAGGGCAAG
GGTGTGAAGT ACGCGGGTGA ATTCATCTTC CGCAAGGAAG GCAAGAAGAA GTAA
|
|---|
| Protein sequence | MSRIGKKPVT VPSGVTATVD GQTVKMKGPK GQLQFIVHDD VDVKFENGQV RVAPRSETKR
ARSLYGTARA QIANLVEGVT KGFEKKLEIT GVGYRAAMQG KNLQLALGYS HDVVYQIPEG
ITIAVPKPTE ITVTGIDPQR VGQVAAEIRA YRPPEPYKGK GVKYAGEFIF RKEGKKK
|
|---|
| |