| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_5000 |
|---|
| Symbol | |
|---|
| ID | 5150248 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | - |
|---|
| Start bp | 5228830 |
|---|
| End bp | 5231511 |
|---|
| Gene Length | 2682 bp |
|---|
| Protein Length | 893 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640559781 |
|---|
| Product | multi-sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_001240910 |
|---|
| Protein GI | 148256325 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.546026 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAAAC CAGTTGATTT CGGCACCGCC TGCAGTTCGC TCCGATCGAT GACGATCGGT
CGGATGATTT TTGGCAGCTT TCTGCTGCTG CTCGCCGTGA TCACCGCCAC CAGCATGGCG
AGCGTCATCG CCATTCGCCA CATCGATTCC ACCTTTGCCG AGCTGCAGCG GCTGCAGGGC
GTCGGCGATC TCGCCGAGGA GATCGATCAG CGCATGAACG AGCTGCGGCT CGCGGCGCGC
GATTTCGTCA CGGATCCAGC CTCGCGCTCC GACCGCGTCA TGGAGGCGGC GACCGAGCTC
AGCGCCTTGT TGAAGAAGAC GCGCCTGCAG CTCGCGCCGG AGCAGCAGGC GACGATCGAT
GGCGTGGCGC AGCGGCTCAG CAATTATCGC GAGGGTATCG ACCGGATCAG CGCGCTGATC
GCACAGCGCG CCGAGTTGCT GTCCGGCCTG CCGGCGGCGC GCGAAGGCTT CGAGGAGGCG
ATCGCGGGCG TGACCGAGCG CGACACCGCG CGGGCGCTGT TCAAGGTGCA GAACCAGATC
GGCGCCGCGC TGCTGGCGCG CGATCCGGCC GGCGCCGAGC AGGCGGCGCG CAGTATCCGC
GCGACACCGA TCCAGGACAA GGCGCTGCGC GCGGCAGCGG ATCGTTACGC CGAGGCGATC
ATCGCCATCG CCGGCACCGA GGACGAAATC GCGCGGCTCG ACAAGGAGGT GCTGGGCATC
GAAGGCCGGC TGATCGGCCG CGTCACCGAG CTGCTGCGGG CGCTGAGCGC GAGCCAGGGC
AAGGTCCTGG CGCGCGACTT CGCCCGCACC CTGGCGGAGA CCAAATGGCA GAGCATCATT
TTCGGCACGG CCGGGGTTCT GATCGGCATT TTCGCCGCCT CCTTCGTGGT CCGCCGCACG
GTGCGGCCGC TGGCCTCGAT CGCTCGCTCG ATCCGGGCGC TGGCCGCAGG CGAGAAGTCG
ACGGCGATTC CGCAGACCGA CGTGCAGAAC GAGATCGGCG ACATCGCCCG CGCCGCGGAG
GTGTTCCGAC AGACCTTGCA GGACGCCGAC GCCGCGCGCG AGGCGGCGGT GCGCGCGCTG
GCCGAGCAGC GGCTGGCCGA GGAGAGCTAT CGCAAGCTGT TCGAGGCTTC GATCGACGGC
ATCTATGTGA CCACGCCGAG CGGGCTCGTG CTCAATGCCA ATCCGGCGCT GGCGCGGATC
ATGGGGTACG ATTCGGCGAG CGATCTGATC CAGAGCGTGA GCGACATCGC CGACACCATC
TATGTGCACC CGCTGGCGCG CAAGCGCTAT CAGAAGCTGA TGCAGCGCGA TGGCATGGTG
CGTGAGTTCG AGTACCAGGT GCGGCGGCGC AATGGCGAGA TCCGCTGGCT GTCGGACAGC
GCCACCGTCG TGCGCGACGA GAGCGGCGAG GTGCTGCGCT ACGAAGGCGT CGTTCGCGAC
ATCACCGATC AGAAGCGCGC CGAGACGGCC ATCGCCGAAG GCCGCCGATT GCTGCAGCAG
GTCATCGACA CGGTGCCGGC GGTGATCAAC GTCAAGGATC GCGAGCTGCG CTACGTCTTG
ATGAACCGCT ACATGGCCGG CATCTTCAAT GTCGAGCCGG AGGATGCGCT CGGCCGCACC
ACCGGCGAAT TGATGTCGCG CTACGGCGCC AGCAAGACCG ACTCGAACGA CAAGCGCGTG
CTGGCGACCA AGGCCGGCCT CGGATTCTAC GAAGAGGAGT ACCTCGATTC CTGCTGCGTG
ATGCGGCAAT GGCTGGTCAA CAAGCTGCCG CTGCTGGATG CCGATGGCGA GGTCGACAAG
ATCGTCACGG TGGCGCTGGA CATCGGCGAA CGCAAGAAAA GCGAGCTGGA AATGCGCAAG
GCGAAGGAGG CTGCCGAAAC GGCGCTCCGG AACCTGCGCG AGACGCAGGC CTCGCTGATC
GAAGCCGAGA AGCTCGCCGC TCTCGGGCGC ATGGTTGCGG GCGTCGCGCA TGAGGTCAAT
AATCCCGTCG GCATCAGCCT GACGGTGGCC TCCGCGCTCG AGCGCAAGAC CGAGCGCTTC
AGCGAGGCCG TGAGCCGCGG TGAACTGCGC CGCTCGAGCC TCAACGAGTT CATCGAGACC
AGTCGCAACG CGGCCGGGCA ACTGGTCGCC AATCTCAATC GTGCGGCCGA GCTGATCCAG
TCGTTCAAAC AGGTCGCGGC CGACCGCAAC TATTCGGACC AGCGGACCTT CGATCTCGCC
GATCTCACCG AGCAGGTGAT GCTGAGCCTG CGGCCAGGCC TGCGCAAGCA GAACCTGACG
CTGAACGTGA ACTGCCAGCC CGATCTGGTG ATGAACAGCT ATCCCGGCCC TTACGGCCAG
GTCCTGACCA ACCTTTTCCT CAACGCCGTC GCGCATGCGT TCCCGGATGG CCGGGGAGGC
ACGATCGAGA TCCAGGCCCG CGAGTCCGGA CGCGACAATG TCGAGATCAT CTTCTCCGAC
AATGGCTGCG GCATGAGCCT GGACGTCCGG CGCCGCGCCT TCGATCCGTT CTTCACGACG
CGGCGCGATC AGGGCGGCAC CGGCCTCGGC CTGCACATCG TCTACAACAT CGTCACCAAT
CGTCTCGGCG GACGGCTCGA TCTCGAGTCC GAGCCCGGGG CGGGGACGCG CATCCAGATC
GTCCTGCCGC GTGTCGCGCC GCTGGAGCAG GCGGCCGAGT AG
|
|---|
| Protein sequence | MSKPVDFGTA CSSLRSMTIG RMIFGSFLLL LAVITATSMA SVIAIRHIDS TFAELQRLQG
VGDLAEEIDQ RMNELRLAAR DFVTDPASRS DRVMEAATEL SALLKKTRLQ LAPEQQATID
GVAQRLSNYR EGIDRISALI AQRAELLSGL PAAREGFEEA IAGVTERDTA RALFKVQNQI
GAALLARDPA GAEQAARSIR ATPIQDKALR AAADRYAEAI IAIAGTEDEI ARLDKEVLGI
EGRLIGRVTE LLRALSASQG KVLARDFART LAETKWQSII FGTAGVLIGI FAASFVVRRT
VRPLASIARS IRALAAGEKS TAIPQTDVQN EIGDIARAAE VFRQTLQDAD AAREAAVRAL
AEQRLAEESY RKLFEASIDG IYVTTPSGLV LNANPALARI MGYDSASDLI QSVSDIADTI
YVHPLARKRY QKLMQRDGMV REFEYQVRRR NGEIRWLSDS ATVVRDESGE VLRYEGVVRD
ITDQKRAETA IAEGRRLLQQ VIDTVPAVIN VKDRELRYVL MNRYMAGIFN VEPEDALGRT
TGELMSRYGA SKTDSNDKRV LATKAGLGFY EEEYLDSCCV MRQWLVNKLP LLDADGEVDK
IVTVALDIGE RKKSELEMRK AKEAAETALR NLRETQASLI EAEKLAALGR MVAGVAHEVN
NPVGISLTVA SALERKTERF SEAVSRGELR RSSLNEFIET SRNAAGQLVA NLNRAAELIQ
SFKQVAADRN YSDQRTFDLA DLTEQVMLSL RPGLRKQNLT LNVNCQPDLV MNSYPGPYGQ
VLTNLFLNAV AHAFPDGRGG TIEIQARESG RDNVEIIFSD NGCGMSLDVR RRAFDPFFTT
RRDQGGTGLG LHIVYNIVTN RLGGRLDLES EPGAGTRIQI VLPRVAPLEQ AAE
|
|---|
| |