| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_4821 |
|---|
| Symbol | |
|---|
| ID | 5155050 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | - |
|---|
| Start bp | 5055817 |
|---|
| End bp | 5057067 |
|---|
| Gene Length | 1251 bp |
|---|
| Protein Length | 416 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640559620 |
|---|
| Product | putative ABC transport system, periplasmic substrate-binding protein |
|---|
| Protein accession | YP_001240751 |
|---|
| Protein GI | 148256166 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.675554 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTCATGC GAAGTGTGGG GTTCGCTGCG CTCACGGCAT TGCTGCTGTC AGGCACGGCC
TCTGCCCAGG AGAAGATCAG GGTCGGGGTC ACCGCCACCC TTGAGGGGAC CTACACCGTG
CTCGGCGAGG ACGGGATGCG CGGTCACGTC ACCGCCGTCA ACGTGCTCGG CAAGAAGATC
GGCGACAAGG AGCTCGAATT CGTCGTGGCT TCGACGGATG CCACGCCGGA CTCCGCCGTC
CGTGCGGTGC GCAAGCTGAT CGAGCAGGAC AAGGTGCAGA TCCTGCTGTC GCCGCTGTCC
GGCGACGAAG GTATCGCGGT CAAGAATTTC GCCAAGACGC ACCCGGAGCT GACCTTCGTC
AATGCCGCGT CAGGTGCACA GGAGACGACC TATGTCGATC CGGCGCCGAA CTTCTTCCGC
TACAACATGG ACGGTGCCCA GTGGCAGGTC GGTCTCGGCA AATACGCCTA TGAGACCAAG
GGCTACCGCA AGATCGCGAC CGTCGGCGAG GATTACTCCT TCATCTATAC CCAGGTGTTC
GGGCTGGCGC TGGAGTTCTG CGGCCTCGGC GGCAAGATCA CGAGCCGGCA ATGGGTGCCG
CTCGGCACCA AGGATTTCGC CTCCGTCATC GCGGCGCTTC CCGACGATGT CGACGCAATC
TATCTCGGCC TCGGCGGCGC CGATGCGGTC AACTTCCTCA ATCAGTATCA GCAGGCCGGT
GGCAAGGCGC ACCTGATGGG CGGCTCGATC ATGATCGATC AGACCATCCT GTCGTCGAAG
GGCAATGCCA AGAACGCGCT GATCGGGACC ATCGCGGCGT CGGGCCAGGC CGACACCTGG
GAAGACCCTC GCTGGCAGAA ATTTGTCAAG GCCTATCAGG ATTCATTCCC GCCGGAGAAG
CGTTTCCCGA GTCCGTCCCT GCTTGCGACC AACTACTACG GATCGACCAT GGCGCTGATC
CTGGCGCTGC GGGAGGTAAA TGGCGATCTG TCGAACAACC AGGCCAAGCT GAAAGAGGCG
CTCGCGAAGA TCGAGATCGA CGCGCCGAAC GGGAAGATCA AGCTCGACTC CAATCGCCAG
GCGATCGGCA CCAACTTCGT GACCGAGGTC GTCGACGACG GCAAGGGCGC GCTGTTCAGC
AAGGTCGTGA AGGTGATTCC CGACGTCAAC CAGACGCTGG GCTATGATCC CGCGACCTTC
GCCAAGATCG GGCTGCCCAG CCGGACTGTT CCTGAATGTA AGAAATATTG A
|
|---|
| Protein sequence | MVMRSVGFAA LTALLLSGTA SAQEKIRVGV TATLEGTYTV LGEDGMRGHV TAVNVLGKKI
GDKELEFVVA STDATPDSAV RAVRKLIEQD KVQILLSPLS GDEGIAVKNF AKTHPELTFV
NAASGAQETT YVDPAPNFFR YNMDGAQWQV GLGKYAYETK GYRKIATVGE DYSFIYTQVF
GLALEFCGLG GKITSRQWVP LGTKDFASVI AALPDDVDAI YLGLGGADAV NFLNQYQQAG
GKAHLMGGSI MIDQTILSSK GNAKNALIGT IAASGQADTW EDPRWQKFVK AYQDSFPPEK
RFPSPSLLAT NYYGSTMALI LALREVNGDL SNNQAKLKEA LAKIEIDAPN GKIKLDSNRQ
AIGTNFVTEV VDDGKGALFS KVVKVIPDVN QTLGYDPATF AKIGLPSRTV PECKKY
|
|---|
| |