| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_4695 |
|---|
| Symbol | |
|---|
| ID | 5152682 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 4920038 |
|---|
| End bp | 4922344 |
|---|
| Gene Length | 2307 bp |
|---|
| Protein Length | 768 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640559497 |
|---|
| Product | putative soluble lytic transglycosylase (SLT) |
|---|
| Protein accession | YP_001240629 |
|---|
| Protein GI | 148256044 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.122855 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCCCTCT CTGCCCGCGC CGCCGCATTG CGCTCGACCG CCCTGTCGAA GTCCCTCTCG
GTGTCCTTGG CCGCCGGCCT GACGCTCGCA TGGGGGCTCG CCGGAGACAT CGCTCTCGCC
AAGGACAAGG TTCCGCTGCC CAAGGCGCGC CCGATCGCCC GCAGCGTGGT TCCCGGTACC
GCCGCCAAAG AGGGCGCGGA GTCCAAGGGC AAGGCCGACG CCCGGGCCGA GGCAAAACCC
GACAGCAAGA GCGGCCCCAA GGGTGCGAGC GAGGCGCCGC GGGCCGCCGC GCCGCGGGAC
ATCATGCCTG GAACCGCCGG CCTGCCGGCG CCGCGCCAGC ACGCTGCCCT GCCCGCCGCC
CGCAAGCCCG TCGTCCCGGC CGCCGTGGCG GCAACCTCTT CGACCTCGCA ATCGGACAAG
GACGCGCTCG AAAACGTCAT CGAACTGGTT CGCAAGCGCA AGCCCGACGA TGCCACCCAG
GTCGCGCAGG CGATCTCGGA TCCCGTGGCG CGCAAGCTGG CCGAATGGGT GATCCTGCGC
AGCGACAACA ACAATGCCAC CGTCGAGCGC TATCGCGCCT TCATCACGGC GAATCCGAGC
TGGCCGTCCC AGAGCTTCCT GCGCCGCCGC CTGGAGGCTG CGCTGTGGGA CGACAAGCGC
GACGACGCCG TGGTGTGGTC CTGGTTCGAG AACGAGTCGC CGCTATCGGC CAAGGGCCGG
TTCGCGCTGG CCCGCGTCAT GCTCAACCGG GGGGATCGCG CCAATGCCGA GCGCCTGGTG
CGCGAAGCCT GGCGCAACGA TGCCATGTCG GAGGAGACGG AGAACAACAT CCTCGACCAG
TTTGGCCCGC TGATCTCCGG CGGCGACCAC AAGGCGCGGA TGGACACTCT ACTGTATGGC
AGCGAGCACG AGGCCGCGTT GCGTGCGGCC CGGCGCCTCG GCGCCGGCCA TGTCGCCCTG
GCCAAAGCGC GGATCGCGAC CTACCGCAAG GCGCCCAACA GCCGCGCTCT GCTCGATGCG
GTGCCGCACG AGCTGCACGG CGACGCCGGC TACATTTTCA GCCGGATCCA GCTGCTGCGA
CGCGACGAGA AGTTTGCCGA GGCAGCACAA CTGATGCTGA ACGCGCCGAA GGATCCGGGA
CGCCTGCACA ATCTCGACGA ATGGTGGATC GAGCGACGGC TGCTGTCGCG CAAGATGATC
GACACCGGCG AGTACCGCAG CGCCTATCTG ATCGCCCGTG ATGCCGCACT GCCCAACCGC
GACATCTACA AGACCGAGCA GGAATTCACC GCCGGTTGGA TCGCGCTGCG CTTCCTCAAC
GATCCCGCGA CCGCGGCCCA GCATTTTGCC CGGATCGGCG TCGGCAGCGT CAATCCGACC
ACCCTGGCCC GCGCCGGATA TTGGCAGGGC CGTGCGGCGG AAGCGATGGG GCGCATGCAG
GAGGCGCGCG CGGCCTACAC GGCGGCCGCC GAGCAATCGA CCAGTTATTA TGGGCAGCTC
GCCCGGGCCA AGCTGGGGCT GCCGCAGCTC GGGCTCAACG CCGCACCGAG CGGCCGCGGA
CGCGGCGTCG AGCGGCTGGA GGTGGTGCGT GCGGCGCAGC TGCTCTACGA GCTCGACGAG
GGCGAGGTCG CGATCCCGAT GTTCGCCGAC ATGGGGGACA ATGGCGATCC GGACGTGCTG
GTCGGCCTCG CCGAGATCGC GGGACGGAAC AGCGACGCGC GGGCGATGCT GCTGGTCGGC
AAGGCGGCGC TGAATCGCGG ACTGCCGTTC GATCACTACG CGTATCCCGT GACCGGCATC
CCGCCGTTCC GCTCGATCGG ACCGGAGGTC GAGCAGAGCG TGATCTTCTC GATCGCGCGC
CAGGAAAGCG CCTTCAACCA GGCCGTGGTC TCGCCCGCGC AGGCCTATGG CCTGATGCAG
GTGACGCCGG ATGCAGGCCG CTATGTCTGC AAGCGCGCTG GCGTCAGCTT CGATCTGAAC
CGGATGAAGA CCGATCCGGT CTACAACGCC GCGCTCGGCG CCGCCGAGCT GGGCGGGCTG
CTCGAGGACT ATCGCGGTTC GTACATCATG ACGTTTGCGG CCTACAATGC CGGCCGCGGC
AGCGTGAAGA AATGGGTCGA GCGCTACGGC GACCCGCGCG ATCCGAAGGT CGACGCAGTC
GACTGGGTCG AGCTGATCCC ATTCGCGGAG ACCCGCAACT ACGTGCAGCG CGTCATGGAG
AATCTGCAGG TCTATCGCGC CCGTTTCGGC GGCGGCTCGC GGCTGCAGAT CGAGGCCGAT
CTGCGTCGCG GTGCCGTGGT CGAGTAG
|
|---|
| Protein sequence | MPLSARAAAL RSTALSKSLS VSLAAGLTLA WGLAGDIALA KDKVPLPKAR PIARSVVPGT
AAKEGAESKG KADARAEAKP DSKSGPKGAS EAPRAAAPRD IMPGTAGLPA PRQHAALPAA
RKPVVPAAVA ATSSTSQSDK DALENVIELV RKRKPDDATQ VAQAISDPVA RKLAEWVILR
SDNNNATVER YRAFITANPS WPSQSFLRRR LEAALWDDKR DDAVVWSWFE NESPLSAKGR
FALARVMLNR GDRANAERLV REAWRNDAMS EETENNILDQ FGPLISGGDH KARMDTLLYG
SEHEAALRAA RRLGAGHVAL AKARIATYRK APNSRALLDA VPHELHGDAG YIFSRIQLLR
RDEKFAEAAQ LMLNAPKDPG RLHNLDEWWI ERRLLSRKMI DTGEYRSAYL IARDAALPNR
DIYKTEQEFT AGWIALRFLN DPATAAQHFA RIGVGSVNPT TLARAGYWQG RAAEAMGRMQ
EARAAYTAAA EQSTSYYGQL ARAKLGLPQL GLNAAPSGRG RGVERLEVVR AAQLLYELDE
GEVAIPMFAD MGDNGDPDVL VGLAEIAGRN SDARAMLLVG KAALNRGLPF DHYAYPVTGI
PPFRSIGPEV EQSVIFSIAR QESAFNQAVV SPAQAYGLMQ VTPDAGRYVC KRAGVSFDLN
RMKTDPVYNA ALGAAELGGL LEDYRGSYIM TFAAYNAGRG SVKKWVERYG DPRDPKVDAV
DWVELIPFAE TRNYVQRVME NLQVYRARFG GGSRLQIEAD LRRGAVVE
|
|---|
| |