| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_4647 |
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| Symbol | ribD |
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| ID | 5149077 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bradyrhizobium sp. BTAi1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009485 |
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| Strand | - |
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| Start bp | 4872637 |
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| End bp | 4873788 |
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| Gene Length | 1152 bp |
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| Protein Length | 383 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 640559449 |
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| Product | 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase |
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| Protein accession | YP_001240581 |
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| Protein GI | 148255996 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
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| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.150937 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCTTCC GGGTCCTGGT CGATCAGGTC GGCGAGAAGC TGAAGGCGCA GAAGGACGCT
GACCGCCGCT TCATGCAGCT GGCGCTCGCG CTCGGCCGGC GCGGGCAGGG GCGAACCTGG
CCCAATCCGG CCGTCGGCGC CGTCGTGGTG AAGGACGGCG TCATCGTCGG CCGCGGCTGG
ACGCAGCCAG GAGGCCGGCC GCATGCCGAG CCGGAGGCGC TCCGGCGCGC CGGCGCGGCC
ACCAAGGGCG CCACACTCTA TGTCTCGCTT GAGCCGTGCT CGCATTTCGG CAAGTCGCCG
CCTTGCGCCG ACGCGGTCAT TGCGGCCGGC ATCAGCCGCG TCGTGTCGGC GATCGAGGAT
CCCAATCCGG AGGTCTCGGG GCAGGGCCAT GCGCGACTCC GGGCCGCCGG CATCCAGGTC
GAAGTCGGCC TGTGCTCGGC GGACGCCAAG CGCGACCATG CCGGATTTTT CCGCCGCATC
CGCGACAGCC GGCCGCACGT GATCCTGAAG TTGGCCGTCT CCGCGGACGA CAAGATCGCA
GCCGCCGGCA ATAAGCCGGT CGCGATTACC GGCGAGGCGG CCCGCACGCG CGTGCATCTG
TTGCGCGCCC AGAGCGATGC CATCCTGATC GGGGTGCGCA CGGCGATTGC CGACGATCCG
CTGCTGACCT GCCGGCTGCC GGGCATGGAG GCCCGCTCGC CGGTGCGCGT GGTGCTCGAT
CCGATGCTGC GGCTTCCGAT GACCAGCCGC CTGGTGCAGA GCGCGCGGAC CACGCCGCTC
TGGATGATCG CCTCCGCGGT GGCGGAGCCC GCGGCGGCGA CCAAGCTCGG CGCTGCTGGC
GCGCAGGTGA TCCGCGTTCC GCCGCAGGTT GAACCATCGG TGCTGGAGCC GCCGGCGGTG
CTGAAAGCGC TCGCCGACAA AGGCATCACC CGCTTGATGA TCGAGGGCGG CAGCCGCGTA
GCATCTTCTT TCATGCAAAG CGGCCTGGTC GATGAAATCT GGCTCCTGCG GGGGGCCGGC
GAGATCGGCG CCGACGGAAT CGCTGCGCTG GACGCATTGC CGCTGACCGC AATCACGCAG
TCGCCGGCCT ATCGCGTTCG TGCTAGCGAA ACGCTCGATA CCGACATCCT CACGATTTAC
GAGCGCGCGT AA
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| Protein sequence | MIFRVLVDQV GEKLKAQKDA DRRFMQLALA LGRRGQGRTW PNPAVGAVVV KDGVIVGRGW
TQPGGRPHAE PEALRRAGAA TKGATLYVSL EPCSHFGKSP PCADAVIAAG ISRVVSAIED
PNPEVSGQGH ARLRAAGIQV EVGLCSADAK RDHAGFFRRI RDSRPHVILK LAVSADDKIA
AAGNKPVAIT GEAARTRVHL LRAQSDAILI GVRTAIADDP LLTCRLPGME ARSPVRVVLD
PMLRLPMTSR LVQSARTTPL WMIASAVAEP AAATKLGAAG AQVIRVPPQV EPSVLEPPAV
LKALADKGIT RLMIEGGSRV ASSFMQSGLV DEIWLLRGAG EIGADGIAAL DALPLTAITQ
SPAYRVRASE TLDTDILTIY ERA
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